Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 686 a.a., Flagellar basal body rod protein:Protein of unknown function DUF1078 from Pseudomonas syringae pv. syringae B728a

 Score =  190 bits (482), Expect = 2e-52
 Identities = 182/688 (26%), Positives = 309/688 (44%), Gaps = 78/688 (11%)

Query: 5   LLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYG-GETY-GMGVHVE 62
           L+++G   +  +   +NT G+N +NV+T GYSRQ V+   +A    G G  Y G G  + 
Sbjct: 3   LISIGLSGINASSAAINTIGNNTANVDTAGYSRQQVLTTASAQIALGQGVGYIGTGTTLS 62

Query: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWFDSVKSL 122
           +VRR ++ +   +L  ++   A              LLS  A+  I   L ++F  ++ +
Sbjct: 63  DVRRIYNSYLDTQLQSSTALSADALAYSGQASKTDTLLSDSATG-ISVQLADFFTKMQGI 121

Query: 123 ADSPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDLQ 182
           A S      R   L ++  +S   N     +  Q D  N  L    +++N+L   +  L 
Sbjct: 122 ATSATQSAERSSFLTQAGALSARFNSVSSQLSTQNDNVNTQLDTFTKKVNELTTTLASLN 181

Query: 183 RLMMRVPGPH---NDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVSGTEA 239
           + + +    +   N L+D   + V +L++   V V +  +   F+I+ G G +LVSG  +
Sbjct: 182 KQITQASAGNATPNTLLDSRSEAVRQLNELVGVKVVE--NNGNFDIYTGTGQSLVSGGTS 239

Query: 240 SQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEHIPYLMDEVGRLAL 299
            ++       D  Q+ + +  G+    +++   GG +  +L  R+E +    +E+GR A+
Sbjct: 240 YKMSASPSPSDPLQYNVQIAYGQTQTDVTSVLTGGSIGGLLRYRNEVLVPATNELGRTAM 299

Query: 300 SFSHEVNTLQSQGLDLRGNVGSALFTDVN-LDVIARSRV--VTNSNSKADMAVFIEDVSQ 356
             S +VN+  +QG+D +GN GS L++ +N  D I +  +   TNS    ++ V I D S+
Sbjct: 300 VLSDQVNSQMNQGIDSKGNFGSNLYSSINSADAITQRSIGKTTNSVGSGNLNVTIGDTSK 359

Query: 357 LKGGEYSMQYNGSE--FVVTLPSGQQTVLPVVKGN--VYVDGLRVEVR-NPPQVGERILV 411
           L   +Y + ++ S    V  LP+G+      +  N     +G  V +  N    G+   V
Sbjct: 360 LTANDYEVTFSDSSNFSVRRLPNGESVGSGSLADNPPKQFEGFSVSLNGNTLAAGDSFKV 419

Query: 412 RPTRNGAAAIRLATEDATKIAAQSFEASTT---------FAQGKAKFK------------ 450
            PTR GA+ I +A  DA  IAA +   +T          F Q     K            
Sbjct: 420 IPTRTGASGISVALTDAKDIAAAAPLTATAGSSNSGTGGFTQPVVNTKSDIYDSTQTADL 479

Query: 451 ---------------ILQAGDVREFEVIVSPTGDQFAVTDTKGNI----LLQPQP----- 486
                           + +  V+ + VI +  G   AV D  GN     ++Q Q      
Sbjct: 480 RNALKDSTPMKLVMGAVNSSGVQSYTVIKANGG---AVLDQNGNAIGGSIIQGQANTVKL 536

Query: 487 ---YPPTGPVTVLGTTFEL----TEGALPNDKFTANLV-PSEGDNGNLRKMINIQTAKR- 537
              Y  T       T FEL    +   + ND F+  L      DN N   ++ +QTAK  
Sbjct: 537 NVGYTDTTTTPNSKTAFELQMTISGSPVANDTFSIGLTGGGSSDNRNALAVVGLQTAKTV 596

Query: 538 --MNDNESTIIDLYHNLNTDVGLKMATMTR--LTDVARLEKEAAQSRIASISGVNLDEEA 593
             +N    T +   +     V   +A+ ++  +T  A +  +A  SR  S+SGV+LDEEA
Sbjct: 597 GVINGGVGTSLSGSYASTVSVVGTLASQSKNDVTATAAVVSQAKSSR-DSVSGVSLDEEA 655

Query: 594 ANMMKFQQAYMASSRIIQASNDTFNTIL 621
           +N++K+QQ Y ASS+II+A+   F+T++
Sbjct: 656 SNLIKYQQYYTASSQIIKAAQTIFSTLI 683