Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 727 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 70.9 bits (172), Expect = 2e-16
 Identities = 71/318 (22%), Positives = 127/318 (39%), Gaps = 21/318 (6%)

Query: 6   LNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVENVR 65
           L+ G   + TAQ+ L+   HN++N+NT GY+R+        P        G+GV    + 
Sbjct: 7   LSAGISGLQTAQKGLDLVSHNLANINTPGYTRKIF-----NPESVVLNGSGVGVQTGTIA 61

Query: 66  RSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVAS-KKIPENLNEWFDSVKSLAD 124
           R  D+   ++L      Y   +        +  L    AS   I  NL  +     +LA 
Sbjct: 62  RRVDEGLNRDLREELAKYTEYKTKASYYQRMQDLFGKPASNNSISHNLTAFGQQFDTLAL 121

Query: 125 SPNDLGARKVVLEKSKLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEIRDLQ-- 182
             +    +   +  ++ ++   N     ++  +   ++ +A  V  +N     I  L   
Sbjct: 122 ETDKSTQQMATVRSAQELTSQFNTISTRLQQMRLTADQDIAGAVAEVNGHLKNIDTLNDE 181

Query: 183 -RLMMRVPGPHNDLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTL-------V 234
             L +       DL DK +  V +L++   VT  +R  G    ++   G TL       V
Sbjct: 182 ITLGVATGRDVTDLQDKRDLEVQQLTELVDVTTFERP-GGALVVYTKGGSTLLDADPIPV 240

Query: 235 SGTEASQLRVIDGFPDTQQHRLAMVEGKALKAISARDIGGKMEAILDMRDEHIPYLMDEV 294
           S T +S +   D         +++        I A    GK+ A++DMRD+ +P    ++
Sbjct: 241 SFTASSSVTAWDSKGGGDFSAISVGGSDITGEIGA----GKLAALIDMRDKTVPAYQSQM 296

Query: 295 GRLALSFSHEVNTLQSQG 312
             LA  FS  +N + ++G
Sbjct: 297 DELAGKFSDSINQIHNRG 314



 Score = 40.8 bits (94), Expect = 2e-07
 Identities = 54/248 (21%), Positives = 101/248 (40%), Gaps = 39/248 (15%)

Query: 403 PQVGERILVRPTRN--GAAAI---RLATEDATKIAAQSFEASTTFAQGKAKFKILQAGDV 457
           P VG  +    + N  G  AI    +A  +  K  A    + T  +  K + +++Q GD 
Sbjct: 484 PNVGGALTFYDSNNPPGGTAIGTLTIAPNETLKDIALKINSDTALS-AKLEAEVVQDGDG 542

Query: 458 REFEVIVSPTGDQFAVTDTKG-------NILLQPQPYPPTGPVTV----LGTTFELTEGA 506
                I    G    +T T G        + L+      +G + V    L  +  ++ GA
Sbjct: 543 YRLR-IKDRAGKDMVITQTAGVGTGLIEQLGLKDSKAGLSGQLRVNQSLLDDSSRISRGA 601

Query: 507 LPNDKFTANLVPSEGDNGNLRKMI-NIQTA-------------KRMNDNESTIIDLYHNL 552
           +  +  T     S GDN    ++  + QTA             +  +D  +  +    + 
Sbjct: 602 VLFNSDTGQYYISAGDNTTANQLAKSFQTAVSFDAAGGVTTGARSFSDYAALTLSQNASE 661

Query: 553 NTDVGLKMATMTRLTDVARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYMASSRIIQA 612
            + V   ++  ++L D  +L+        A IS VN+DEE + ++ ++Q Y AS+++I A
Sbjct: 662 ASAVATTVSYQSQLADTLQLKS-------AEISAVNMDEELSQLLVWEQMYRASAKVISA 714

Query: 613 SNDTFNTI 620
           + D  + +
Sbjct: 715 AADMLDVL 722