Pairwise Alignments

Query, 624 a.a., flagellar hook-associated protein FlgK from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., Protein of unknown function DUF1078 (NCBI) from Rhodospirillum rubrum S1H

 Score = 53.5 bits (127), Expect = 2e-11
 Identities = 70/334 (20%), Positives = 133/334 (39%), Gaps = 52/334 (15%)

Query: 3   SDLLNVGTQSVLTAQRQLNTTGHNISNVNTEGYSRQSVIQGTNAPRQYGGETYGMGVHVE 62
           + ++  G   +L AQ Q+  T  N++N    GY+ +S    T     YGG+   +GV+V 
Sbjct: 4   ASIIATGRSGILGAQAQIAVTSTNLTNAGATGYTAKSASTSTQV---YGGKA--VGVNVV 58

Query: 63  NVRRSWDQFAVKELNIASTDYAFKRDTEENLDMLSKLLSSVASKKIPENLNEWFDSVKSL 122
               S DQ    ++ + S   A   DT  +   LS +L+S  +      L     ++++ 
Sbjct: 59  GYGNSVDQILAADV-VKSASTAAYDDTIASY--LSSVLNSYGTTAKGSPLESATTALQTA 115

Query: 123 ADSPNDLGARKVVLEKS----KLISQNLNDFHETVRLQKDITNKGLALGVERINQLALEI 178
             +    GA    ++K     +  +++LN     ++  +   ++ +A  VE IN L  ++
Sbjct: 116 VSNAVTAGADSDSVDKVVATLETWTKSLNTLSSAIQSSRTAADQHVAEEVETINGLLGDL 175

Query: 179 RDLQRLMMRVPGPHN---DLMDKHEKLVSELSQYTKVTVTQRKHGEGFNIHIGNGHTLVS 235
             L     +     N   D+ D+   L++ L+ +  +       GE  N+    G +L++
Sbjct: 176 DKLNSEFSKAKAAGNPTADIEDQQRTLLTSLATHVDINYYTTATGE-LNVFTKGGKSLLT 234

Query: 236 GTEASQLRVIDGFPDTQQHRLAMVEGKALKA--------ISARDI-------------GG 274
            +                H+LA      LKA        +  + +             GG
Sbjct: 235 SSV---------------HKLAAEPTGILKAGNPGAKITLDGQTVVDPTVDPPIKELTGG 279

Query: 275 KMEAILDMRDEHIPYLMDEVGRLALSFSHEVNTL 308
            + A+L MRD  +P L  ++   A   +  +NT+
Sbjct: 280 TLGALLTMRDTTLPALQKDLDAFATDLTTIINTV 313



 Score = 44.3 bits (103), Expect = 1e-08
 Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 11/79 (13%)

Query: 545 IIDLYHNLNTDVGLKMATMTRLTDVARLEKEAAQSRIASISGVNLDEEAANMMKFQQAYM 604
           + DL    N+   L   T T L+D           +  +  GVN++EE A M+ FQQ++ 
Sbjct: 383 VADLSTAANSKASLSAKTATALSD-----------KFDNTYGVNVEEETAKMLVFQQSFQ 431

Query: 605 ASSRIIQASNDTFNTILAL 623
            +S++I  + + FNT++++
Sbjct: 432 MTSQVITTAREMFNTLMSM 450