Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 521 a.a., Flagellar hook-associated protein FlgL from Pseudomonas fluorescens FW300-N2E2

 Score = 84.3 bits (207), Expect = 7e-21
 Identities = 71/305 (23%), Positives = 137/305 (44%), Gaps = 18/305 (5%)

Query: 4   RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63
           RIS+   Y++   + ++  + V     + +S  ++ +A+D+P+    +  +G Q   L Q
Sbjct: 2   RISTSQFYESTAANYQKNFANVVKTSEEASSLVRVNTAADDPVGASRLLQLGNQASMLAQ 61

Query: 64  YLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNF 123
           +      ++  L   E ++++       AK   +   N   +  DR A A  L ++    
Sbjct: 62  FETNANTIKATLGTTEAVMTSIGNVLQRAKELAVGAGNAGYTDADRQANASELAQIEEQL 121

Query: 124 INLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNPGSK 183
           ++L N +DE+G YIF+G+K    PF R+  G+ +Y GD     + + +++ +  N+ G +
Sbjct: 122 LSLMNSKDENGKYIFSGSKGDTIPFTRNTDGSYSYNGDQVTLDLPVGDTMSMATNSTGWE 181

Query: 184 VFMEIPNPFGSYEPNY--ALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGKNGYQL-- 239
           VF +  N   S       A+ +G  +L +  V+ +    + +R       E  +G QL  
Sbjct: 182 VFQQAVNTSRSQVTMTAPAVNDGRVVLSDGQVSSSVSYNSKFRGGEPYTVEFTSGTQLRI 241

Query: 240 ------ERNGSVVQAGEFD--AKTG--IQFEELNIQVKGQISKGDAI-ELTPRTTFSVF- 287
                 +      Q G FD  +K+G  +QF  + + +   +  GD    + P  TF++  
Sbjct: 242 TDALGNDVTAEASQGGAFDPNSKSGQAVQFRGVELTLNINLQTGDVPGTVLPGHTFTLAA 301

Query: 288 --DTF 290
             DTF
Sbjct: 302 KPDTF 306



 Score = 40.8 bits (94), Expect = 9e-08
 Identities = 22/74 (29%), Positives = 37/74 (50%)

Query: 324 LNKTRTDIGARLSTLDIQEEQHEDFKISLAKSKSTFEDLDYAEAVIEFNENSRALEASQK 383
           L+   + +G R   L+ Q + ++   ++  +++S+  D D AE +         L+ASQ 
Sbjct: 448 LSSALSSVGGRGQALETQSDTNQSLLLANNQTQSSIRDSDAAEVMTRLTLQQTMLQASQL 507

Query: 384 AFGKTKDLTLFNYI 397
           AF K   L LFN I
Sbjct: 508 AFSKIAQLGLFNKI 521