Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 530 a.a., Flagellin, N-terminal from Pseudomonas syringae pv. syringae B728a

 Score = 90.5 bits (223), Expect = 1e-22
 Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 15/267 (5%)

Query: 4   RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63
           RIS+   +++   + +R  S +     +++SG KL +A D+P+    +  + QQ   L Q
Sbjct: 2   RISTTQFFESTNTNYQRNYSNLNKTSEEVSSGIKLNTAGDDPVGAARVLQLAQQNSMLTQ 61

Query: 64  YLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNF 123
           Y   I  +   +   E  +++  +   +A+  ++   +G+ +  DR+A+A  L++  +  
Sbjct: 62  YETNIGTINTNVVTTETTLTSIIDTMQAAREQIVSAGSGAFTDSDRLAKASALKQYQSQI 121

Query: 124 INLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNPGSK 183
           + L N QD +G YIF+G+K    P+ ++  G+ +Y GD     + + + L +  N  G +
Sbjct: 122 LGLMNSQDPNGQYIFSGSKASTPPYAQNADGSYSYKGDQTSVNLAVGDGLVMASNTTGFE 181

Query: 184 VFMEIPNP--FGSYEPNYALQEGSELLLERAVNLNPDDTASYR------VTFVDMPEGK- 234
            F +  N     +   + A  +G   L    V   P   ASY+      +TF+   + K 
Sbjct: 182 AFEQSVNTTRTSATRLSPATDDGKIGLSGGLVTSTPTYNASYQGGEPYTLTFLSGTQFKI 241

Query: 235 ---NGYQLE---RNGSVVQAGEFDAKT 255
              +G  +     +G     G FDA+T
Sbjct: 242 TDASGTDVSSDTSSGGKFSHGSFDAQT 268



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 33/143 (23%), Positives = 60/143 (41%), Gaps = 7/143 (4%)

Query: 262 LNIQVKGQISKGDA--IELTPRTTFSVFDTFRDAIRY----AEGSVSDASN-TAKLHQLV 314
           +N  + G  + GD   +E     T ++ +T   AI+      +G++  + N TA L+  +
Sbjct: 388 VNFNISGTPAAGDQFIVESGTHQTENILNTLTAAIKALSTPTDGNLVASQNMTAALNTAL 447

Query: 315 EEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLAKSKSTFEDLDYAEAVIEFNEN 374
               +A    +  R+  GAR      Q   ++  K +    + T+ + D  EA       
Sbjct: 448 GNMSSAIEQASTARSSGGARQLAATAQGTTNDLLKDNNTVEQGTYVNADIVEATTRLTLQ 507

Query: 375 SRALEASQKAFGKTKDLTLFNYI 397
              L+ASQ+ F     L LF+ +
Sbjct: 508 KTMLDASQQVFTMLSKLNLFSQL 530