Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., flagellar hook-associated protein FlgL (RefSeq) from Shewanella amazonensis SB2B

 Score =  208 bits (530), Expect = 2e-58
 Identities = 122/400 (30%), Positives = 200/400 (50%), Gaps = 6/400 (1%)

Query: 4   RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63
           RIS+   +    N+I +++++      QL+SGKK+ ++ D+P+A   I N+ QQ+  + Q
Sbjct: 2   RISTSQMFTQNTNNILQKQTETAKLLEQLSSGKKVNTSGDDPVAALGIDNLNQQQALVDQ 61

Query: 64  YLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNF 123
           +L  I   +N L   E  + + EE     +  ++  +NG LSP +R   A  ++      
Sbjct: 62  FLKNIDYAKNHLGIAESKLGSAEELVTGLREQILRGVNGGLSPSERQMIADEMRGSLQEL 121

Query: 124 INLANVQDESGNYIFAGTKPKNQPFFRDNQGNVTYAGDDYQRKMKISNSLEIPFNNPGSK 183
           +N+AN +DESGN++F+G K   +PF  D  GN+ Y+GD   R   IS  + +  N PG  
Sbjct: 122 LNVANTRDESGNFMFSGFKTDTEPFAFDGAGNMVYSGDAGVRDAMISRGIAMGTNVPGDM 181

Query: 184 VFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGKNGYQLE--- 240
            FM  PN  G Y  NY   +  +  ++ A   NP        TF  +  G  G  LE   
Sbjct: 182 AFMTSPNALGDYTVNYLSSQAGDFKVQSAAITNPAAHVEDTYTFNFIDNGSGGVNLEVRD 241

Query: 241 -RNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDTFRDAIRYAE- 298
             NG V     FDA   + F  ++++++G  + GD+I L P+   S+FDT   AI   E 
Sbjct: 242 SANGLVTTVNNFDATNPVSFNGIDVKLEGTPAAGDSISLAPQAEVSIFDTINKAIALIED 301

Query: 299 -GSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLAKSKS 357
              ++  +  A+L QL+ +  +    L+  R+  G  L +L+    +H + ++    + S
Sbjct: 302 DSRMNSPAGIAELAQLLNDTDSGLNQLSTARSVAGNNLKSLESYAGRHAEEQVVNTSALS 361

Query: 358 TFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397
             EDLDYA A+ EF +   AL A    F +   ++LF+Y+
Sbjct: 362 LLEDLDYATAITEFEKQQLALNAVSNVFSRVGSVSLFDYL 401