Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., flagellar hook-associated protein FlgL (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  190 bits (483), Expect = 5e-53
 Identities = 116/396 (29%), Positives = 197/396 (49%), Gaps = 13/396 (3%)

Query: 12  QAVQNDIRRQE--SKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQYLDAIV 69
           Q++ + +++Q   SKV     QL+SGKK+ ++ D+P+A   I N+ Q+   + Q++  I 
Sbjct: 11  QSITSVLQKQTATSKVLE---QLSSGKKVNTSGDDPVAALGIDNLNQRNALVDQFMKNID 67

Query: 70  LVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNFINLANV 129
              NRL   E  + + E+ + S +  +M  +NG+LS  +R   A  +++     ++LAN 
Sbjct: 68  YANNRLAVTESKLGSAEDLTGSIREQLMRAVNGTLSDSERQMIADEMKDSLKELLSLANS 127

Query: 130 QDESGNYIFAGTKPKNQPFFRDNQ--GNVTYAGDDYQRKMKISNSLEIPFNNPGSKVFME 187
           +DESGNY+F+G     QPF  DN     + Y+GD   R   + + + I  N PG + FM+
Sbjct: 128 KDESGNYLFSGFSTDKQPFAFDNSTPPKIVYSGDSGVRDSLVQSGVAIGTNIPGDQAFMK 187

Query: 188 IPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGKNGYQLE----RNG 243
            PN  G Y  NY   +  +  ++ A   +     +   TF     G  G  L+     N 
Sbjct: 188 APNGLGDYSVNYLASQQGDFKVQTAKIADQATYVADTYTFNFSDNGAGGVNLQVLDSANN 247

Query: 244 SVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDTFRDAIRYAE--GSV 301
            V     FDA T + F  + +++ G+ S GD+  + P++  S+FDT  +AI   E     
Sbjct: 248 PVANVTNFDATTPVSFNGIEVKIDGKPSAGDSFSMEPQSEVSIFDTISNAIALIEDPNVA 307

Query: 302 SDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLAKSKSTFED 361
           +     A+L Q++    +    ++  R+  G  L T++  ++ H + K+    + S  ED
Sbjct: 308 NSPQGKAQLAQILNNIDSGVNQMSSARSVAGNNLKTVERYKDTHTEEKVVNTSALSLLED 367

Query: 362 LDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397
           LDYA A+ EF +   AL A    F K   ++LF++I
Sbjct: 368 LDYASAITEFEKQQLALNAVSNVFSKVGSVSLFDFI 403