Pairwise Alignments

Query, 397 a.a., flagellar hook-associated protein 3 from Vibrio cholerae E7946 ATCC 55056

Subject, 403 a.a., flagellar hook-associated protein FlgL (RefSeq) from Shewanella sp. ANA-3

 Score =  187 bits (475), Expect = 5e-52
 Identities = 113/402 (28%), Positives = 193/402 (48%), Gaps = 8/402 (1%)

Query: 4   RISSFHNYQAVQNDIRRQESKVFNNQAQLASGKKLLSASDNPLATHYIQNVGQQEEQLRQ 63
           R+SS   +      + ++++       QL+SGKK+ +A D+P+A   I N+ Q+   + Q
Sbjct: 2   RLSSAQIFNQSITSVLQKQTATSKILEQLSSGKKVNTAGDDPVAALGIDNLNQRNALVDQ 61

Query: 64  YLDAIVLVRNRLEHQEVIISNTEEFSDSAKRTVMEMINGSLSPEDRVARARVLQEMANNF 123
           ++  I    NRL   E  + + E  + S +  VM  +NG+L+  +R   A  ++      
Sbjct: 62  FMKNIDYATNRLAVTESKLGSAENLASSIREQVMRAVNGTLADSERQMIADEMKGSLEEL 121

Query: 124 INLANVQDESGNYIFAGTKPKNQPFFRDNQ--GNVTYAGDDYQRKMKISNSLEIPFNNPG 181
           +++AN +DESGNY+F+G     +PF  DN     + Y+GD   R   + + + +  N PG
Sbjct: 122 LSIANSKDESGNYMFSGYSTDKEPFAFDNSTPPKIVYSGDSGIRNSLVQSGVALGTNVPG 181

Query: 182 SKVFMEIPNPFGSYEPNYALQEGSELLLERAVNLNPDDTASYRVTFVDMPEGKNGYQLE- 240
              FM+ PN  G Y  NY   +  E  ++ A   +P    +   TF     G  G  L+ 
Sbjct: 182 DTAFMKAPNGLGDYSVNYLASQQGEFSVKTAKIADPATYLADTYTFNFSDNGSGGTNLQV 241

Query: 241 ---RNGSVVQAGEFDAKTGIQFEELNIQVKGQISKGDAIELTPRTTFSVFDTFRDAIRYA 297
               N  V     FDA T + F  + + + G+ S GD+  + P++  S+FDT   AI   
Sbjct: 242 LDSANNPVANIANFDAATPVSFNGIEVNISGKPSAGDSFTMEPQSEVSIFDTISRAIALI 301

Query: 298 E--GSVSDASNTAKLHQLVEEFHTAFIHLNKTRTDIGARLSTLDIQEEQHEDFKISLAKS 355
           E   S +     ++L Q++ +  +    ++  R+  G  L  ++  ++ H + ++    +
Sbjct: 302 EDPNSANTPQGRSQLAQILNDIDSGVNQISSARSVAGNNLKAVESYKDTHIEEQVLNTSA 361

Query: 356 KSTFEDLDYAEAVIEFNENSRALEASQKAFGKTKDLTLFNYI 397
            S  EDLDYA A+ EF +   AL A    F K   ++LF+YI
Sbjct: 362 LSLLEDLDYASAITEFAKQQLALNAVSSVFSKVGSVSLFDYI 403