Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  159 bits (401), Expect = 1e-43
 Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 2/167 (1%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M ++++TN S++  Q  L+K    L T+ +RL +G RINSA DDAAGLQI+ RL A  RG
Sbjct: 1   MALSIHTNYSSLITQTNLSKTNNTLGTNQQRLGTGLRINSAADDAAGLQIATRLNAGVRG 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           + VA+RN ND +S+ QTAEGA NE+T ILQRM+DLA QSANGTN+  +R AL  E V L 
Sbjct: 61  MAVAIRNTNDAVSMLQTAEGAFNEATDILQRMKDLATQSANGTNTQKDRDALEAEFVELG 120

Query: 121 DELNRIAETTSFGGRKLLNGS--FGEASFQIGSSSGEAIIMGLTSVR 165
            ELN IA  T + G  LL+G     + +FQIG+SS E + + +   +
Sbjct: 121 KELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTK 167



 Score = 80.1 bits (196), Expect = 7e-20
 Identities = 40/103 (38%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 276 TTVQDIDITSVGGSQNAVGIIDAALKYVDSQRADLGAKQNRLSHSISNLSNIQENVEASK 335
           TTV  + + +  G+   +  ++ AL  + + R  LGA  NRL+H+ +NL+N+++N E +K
Sbjct: 177 TTVPGLSVAA--GAVATIDALETALDDLGATRGALGANINRLNHTANNLANMKDNTEMAK 234

Query: 336 SRIKDTDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLL 378
            RI D DFA E+  +TK+ +L Q+G S+L QA Q+P+  + LL
Sbjct: 235 GRIMDADFASESANMTKNSMLMQSGISMLKQAGQMPSMVMGLL 277