Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  323 bits (828), Expect = 5e-93
 Identities = 192/399 (48%), Positives = 255/399 (63%), Gaps = 25/399 (6%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M + VNTN+ ++  QR L  ++  L TSM+RLS+G+RINSAKDDAAGLQI+NRLT+Q  G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           L VA+RNANDGIS+AQTAEGA+ +ST+ILQRMRDLALQSANG+NS SER+ALN E   L+
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DELNRIAETTSFGGRKLLNGSFGEASFQIGSSSGEAIIMGLTSVRADDFRMGGQSFIAEQ 180
            EL+RI+ TT+FGGR+LL+GSFG ASFQ+GS++ E I +G+  + +    +  + F    
Sbjct: 121 KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANEIISVGIAEMSSKS--LSAKFFENTS 178

Query: 181 PKTKEWGVPPTARDLKFEFTKKDGEAVVLDIIAKDGDD----IEELATYINGQTDLFKAS 236
           PK        TA ++   FT  +G+A  +      GDD     +++A  IN       A 
Sbjct: 179 PKAAVATTVTTAGEIDVGFT-VNGKAYAVTANVAVGDDEKTVNQKIAAAINDTNSGVGAF 237

Query: 237 VDQEGKLQIFVAEPNIEGNFNISGGLATELGLNGG--------PGVKT--------TVQD 280
           V  +  L I   E   E   N    L+  +    G        P   T         V  
Sbjct: 238 VKDDNTLSIVSRE--TEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSG 295

Query: 281 IDITSVGGSQNAVGIIDAALKYVDSQRADLGAKQNRLSHSISNLSNIQENVEASKSRIKD 340
           +D+ S   +Q AV + D A++ +D+QRADLGA QNR  ++I+NL NI ENV A++ RI+D
Sbjct: 296 VDLLSAENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIED 355

Query: 341 TDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLLQ 379
           TDFA ET  L+K+QILQQAGT+ILAQAKQLP + +SLLQ
Sbjct: 356 TDFAAETANLSKNQILQQAGTAILAQAKQLPQAVLSLLQ 394