Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  174 bits (442), Expect = 2e-48
 Identities = 94/158 (59%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M I VNTNV+++ AQ+ L  +   L TSMERLSSG RINSAKDDAAGL ISNRL +Q RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNASGSNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           L+V MRNAND ISIAQ +EGAM E T++LQRMRDL++Q+ NG NS ++ QAL +E  AL 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQAENGANSTADLQALKDEMDALA 120

Query: 121 DELNRIAETTSFGGRKLLNGSFGEA-SFQIGSSSGEAI 157
            E+  I   T+FG  KLLNG F    +FQ+G   GE I
Sbjct: 121 TEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQDGEDI 158



 Score =  112 bits (279), Expect = 2e-29
 Identities = 70/180 (38%), Positives = 101/180 (56%), Gaps = 12/180 (6%)

Query: 209 LDIIAKDGDDIEELATYINGQTDLFKASVDQEGKLQIFVAEPNIEGNFNISGGLATELGL 268
           L I A++G +       +  + D     +   G    F     + G+F  S G   ++G 
Sbjct: 95  LSIQAENGANSTADLQALKDEMDALATEITAIGTNTAFGDTKLLNGDF--SAGKTFQVGH 152

Query: 269 NGGPGVKTTVQDIDITSVG----------GSQNAVGIIDAALKYVDSQRADLGAKQNRLS 318
             G  +K +V   D  ++           G  +A+  IDAA+K +D+ RA LGA QNRL+
Sbjct: 153 QDGEDIKVSVGKSDAAALSVNSLTVLTSAGRASALTKIDAAIKKIDTSRAKLGAVQNRLA 212

Query: 319 HSISNLSNIQENVEASKSRIKDTDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLL 378
           H+ISN +N Q NV  +KSRI D DFAKET+ +TK+Q+LQQ G+++LAQA QLP  A+SLL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLPQVALSLL 272