Pairwise Alignments

Query, 379 a.a., flagellin A from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  170 bits (431), Expect = 4e-47
 Identities = 92/158 (58%), Positives = 112/158 (70%), Gaps = 1/158 (0%)

Query: 1   MTINVNTNVSAMTAQRYLTKATGELNTSMERLSSGNRINSAKDDAAGLQISNRLTAQSRG 60
           M I VNTNV++M AQ+ L  +   L+TSMERLSSG RINSAKDDAAGL ISNRL +Q RG
Sbjct: 1   MAITVNTNVTSMKAQKNLNTSNSGLSTSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LDVAMRNANDGISIAQTAEGAMNESTSILQRMRDLALQSANGTNSASERQALNEESVALQ 120
           L+V MRNAND ISIAQ AEGAM E T++LQRMRDL +QS NG NS ++  ++  E   L 
Sbjct: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTIQSENGANSTADLVSIKAEMDQLA 120

Query: 121 DELNRIAETTSFGGRKLLNGSFGEAS-FQIGSSSGEAI 157
            E++ I  +T+FG  KLL G+F     FQ+G   GE I
Sbjct: 121 TEIDSIGNSTAFGNTKLLTGTFSAGKVFQVGHQEGEDI 158



 Score =  121 bits (304), Expect = 2e-32
 Identities = 78/180 (43%), Positives = 103/180 (57%), Gaps = 12/180 (6%)

Query: 209 LDIIAKDGDDIEELATYINGQTDLFKASVDQEGKLQIFVAEPNIEGNFNISGGLATELGL 268
           L I +++G +       I  + D     +D  G    F     + G F  S G   ++G 
Sbjct: 95  LTIQSENGANSTADLVSIKAEMDQLATEIDSIGNSTAFGNTKLLTGTF--SAGKVFQVGH 152

Query: 269 NGGPGVKTTVQDIDITS--VGGSQNAVGI--------IDAALKYVDSQRADLGAKQNRLS 318
             G  +K TV+  + TS  VG   NA           IDAA+K +DSQRADLGA QNRL+
Sbjct: 153 QEGEDIKVTVKASNKTSLSVGALNNATSANRASSLAKIDAAIKTIDSQRADLGAVQNRLA 212

Query: 319 HSISNLSNIQENVEASKSRIKDTDFAKETTQLTKSQILQQAGTSILAQAKQLPNSAISLL 378
           H+ISN +N Q NV  +KSRI D DFAKET+ +TK Q+LQQ G+++LAQA QLP  A+SLL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSAMTKYQVLQQTGSAMLAQANQLPQVALSLL 272