Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 352 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  190 bits (482), Expect = 5e-53
 Identities = 123/343 (35%), Positives = 176/343 (51%), Gaps = 21/343 (6%)

Query: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMREVDDKPWMGSKP- 59
           M++  L DG    W  +  P   +GKR RK F TKGEA  +E     ++ + P    KP 
Sbjct: 7   MAILALPDGR---WRVDVEPI--KGKRFRKTFKTKGEAQRFEATCRSKLIESPQWSPKPK 61

Query: 60  DNRRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSH 119
           D RRLS+L++ W ++HG ++   +         ++ L DP+A  FT+  +  +RA R+S 
Sbjct: 62  DRRRLSQLVDCWGRLHGQSLSDYEGRRVIMDRMVERLKDPVAIAFTATDFAEYRAKRLS- 120

Query: 120 FNKENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADI 179
                  +SP   N +L+ L  MF+ L +  +    NPL  +  I+V +R L+ LD   I
Sbjct: 121 -----SGISPKTLNNELSYLRAMFNELRRLGEIEFENPLSMLRAIRVQERELSCLDSHQI 175

Query: 180 QPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGK 239
           +   Q L       RS+  P + LIA ICL TG R  EA  L  S++ +  L FV TK K
Sbjct: 176 ERLFQVL-------RSMVHPHVELIATICLVTGCRWGEAQGLTISRVGDGMLQFVNTKSK 228

Query: 240 RIRSVPISENLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRHTFAT 299
           R R VPI + L + I           +         ++  L   +P GQ +HVLRHTFA+
Sbjct: 229 RRRVVPIDQKLAERIRQHLRQHGAFTNCRDRFDEAVVRAGLG--LPAGQKSHVLRHTFAS 286

Query: 300 HFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNP 342
           HF+ N G+IL LQ+ILGH  +  TM YAH +PDHL   +   P
Sbjct: 287 HFIANGGNILTLQKILGHSSLAMTMRYAHLAPDHLQDVLAFGP 329