Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  179 bits (454), Expect = 9e-50
 Identities = 120/350 (34%), Positives = 172/350 (49%), Gaps = 32/350 (9%)

Query: 1   MSVRNLKDGSKKPWLCECYPQGREGKRVRKRFATKGEATAYENFIMREVDDK-PWMGSKP 59
           M+++ L DG    W  +  P   +GKR RK   TK EA  +E     +  +   W     
Sbjct: 7   MAIQQLSDGR---WRVDVEPV--KGKRFRKTLKTKAEAMRFEATCRAKCSESNDWAPRPK 61

Query: 60  DNRRLSELLETWWQVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSH 119
           D RRLSEL+E W+ +HG ++  G           K +GDPIA      +  A RA  +  
Sbjct: 62  DKRRLSELVELWFDLHGVSLSDGVRRVAILRACAKAMGDPIARMVDGAKIAATRARWML- 120

Query: 120 FNKENKSLSPTYQNFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADI 179
                  ++    N +L  L  +++ L K    + P P   I P+++ +R LAYL K  I
Sbjct: 121 -----AGVTGKTANNRLGYLKAVYNELHKLDVIDYPCPFTRIRPVRLQERPLAYLTKPQI 175

Query: 180 QPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGK 239
              L  L       R+ S P   ++A+ICLATGAR  EA +L   +I    L F  TK K
Sbjct: 176 SELLDAL-----QARTTS-PHPAMVARICLATGARWGEAQALRLERIRGNALVFANTKSK 229

Query: 240 RIRSVPISENLYKEIMLASSSSTKIFSTTYG------SAHRYIKKALPDYVPEGQATHVL 293
           R+R VP++  L        +++ K    TYG         R +  +     P GQA+H+L
Sbjct: 230 RVRMVPVTPEL--------AAAIKKHWQTYGPFTNCIGVFRLVLLSTSIKPPRGQASHIL 281

Query: 294 RHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPL 343
           RHTFA HF+M  G I+ L+ ILGH  +  TM YAH +P+HL  A++L+PL
Sbjct: 282 RHTFAAHFIMGGGHIVTLKEILGHASLNMTMRYAHLAPEHLSDAIRLSPL 331