Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., Site-specific recombinase XerD from Pseudomonas stutzeri RCH2

 Score =  181 bits (459), Expect = 2e-50
 Identities = 117/333 (35%), Positives = 184/333 (55%), Gaps = 25/333 (7%)

Query: 14  WLCECYPQGREGKRVRKR-FATKGEATAYENFIMREVDDKPWMGSKPDNRRLSELLETWW 72
           W  + +     G R RKR F TK EA  +   + RE   +     +    RL++L++ W+
Sbjct: 9   WDVDFWLDRTAGIRKRKRGFRTKSEAERWVVDMRREYSHR----GRDPGERLADLVQVWY 64

Query: 73  QVHGHTIKSGKVVYRKTALTIKELGDPIASTFTSKQYLAFRASRVSHFNKENKSLSPTYQ 132
           ++HG T+K  K  Y +T   +  LG+PIAS+FT+  +  +RA R+       KS +P   
Sbjct: 65  ELHGATLKDQKR-YGRTLAIVDALGNPIASSFTALDFSRYRAERL-------KSCTPATV 116

Query: 133 NFQLNLLSGMFSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESD 192
           N +   L  +F+ LI+   W+  NP+  +  ++V++  L YL   + +  L       + 
Sbjct: 117 NHEHRYLKAVFNELIRLGVWHEANPVAKLRQLRVDETELTYLTLDECRLVLDECA---AS 173

Query: 193 GRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGKRIRSVPISENLYK 252
             S ++P    +AK+CLATGAR  EA S+ R+Q+   ++ F  TK  R+R++P+ ++L K
Sbjct: 174 TNSHTLP----VAKLCLATGARWDEAESITRNQLLNGQVRFARTKNGRVRTIPVPDDLVK 229

Query: 253 EIMLASS--SSTKIFSTTYGSAHRYIKKALPDYVPEGQATHVLRHTFATHFMMNRGDILI 310
            +ML      S ++FS+   SA R   +    + P GQ TH+LRHTFA+H+MM  G+IL 
Sbjct: 230 -LMLERGYPGSGRLFSSCR-SAFRKAYERTGLHTP-GQLTHILRHTFASHYMMQGGNILT 286

Query: 311 LQRILGHQKIEQTMAYAHFSPDHLIQAVQLNPL 343
           LQRILGH  I+ TM Y+H +PDH    +  +PL
Sbjct: 287 LQRILGHGDIKMTMRYSHLAPDHFATVLSHSPL 319