Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 301 a.a., site-specific tyrosine recombinase XerD from Parabacteroides merdae CL09T00C40

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 55/221 (24%), Positives = 94/221 (42%), Gaps = 27/221 (12%)

Query: 135 QLNLLSGM--FSRLIKYKQWNLPNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGGFESD 192
           Q  ++SG+  F R +    +   +P + +E  K+  +    L   +I   L  +     +
Sbjct: 72  QARIISGIKSFYRFLFLDDYITTDPTELLESPKIGLKLPEVLTVNEINSILDTIDLTLPE 131

Query: 193 GRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTF--VETKGKRIRSVPISENL 250
           G+         + ++  + G R+SE +SL  + +  F   F  VE KG + R VPISE  
Sbjct: 132 GQRNRA-----MLEVLYSCGLRVSELVSLRFTDVY-FDEGFIKVEGKGSKQRLVPISETA 185

Query: 251 YKEIM----------LASSSSTKIFSTTYGSA-------HRYIKKALPDYVPEGQATHVL 293
            KEI           +       +F +  G+A       H   ++     + +  + H  
Sbjct: 186 IKEIKNYLYDRNHVAVKKGFEDILFLSRRGTALSRIMVFHIIKQQTEMAGIKKNVSPHTF 245

Query: 294 RHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHL 334
           RH+FATH +    ++L +Q +LGH+KI  T  Y H     L
Sbjct: 246 RHSFATHLLEGGANLLAIQEMLGHEKITTTEIYTHIDRQFL 286