Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 392 a.a., putative phage integrase, catalytic core from Phaeobacter inhibens DSM 17395

 Score = 54.3 bits (129), Expect = 5e-12
 Identities = 53/228 (23%), Positives = 100/228 (43%), Gaps = 32/228 (14%)

Query: 134 FQLNLLSGMFSRLIKYKQ-WNL----PNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGG 188
           +Q N   G+ S++    + W L     NP   +   +  +R   YL++ ++Q     L  
Sbjct: 158 YQANRTLGVLSKMFNLAEIWGLRPDGSNPCRHVPKYREIKRE-RYLNQNELQRLGHVLSE 216

Query: 189 FESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETKGKRIRSVPISE 248
            E +G     P +V   ++ + TG R+ E  +L+   I++  +   +TK    R +P+ +
Sbjct: 217 VEREGTET--PFVVAAFRLLILTGCRLGEIQTLKWDYITDTGMELPDTK-TGARRIPLPQ 273

Query: 249 NLYKEIMLASSSSTKIFSTTYGSAHRYIKKALPDYVPE---------------GQATHVL 293
              ++++            T G+ +    K    Y  +               G   H L
Sbjct: 274 PA-RDVLTH-------LPRTPGNPYVIEGKLAGQYATDLQHPWRRIRARAGLAGVRIHDL 325

Query: 294 RHTFATHFMMNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLN 341
           RHT+A++ + +   I ++ R+LGH +I+ TM YAH + D + QA + N
Sbjct: 326 RHTYASNAVSSGMPIQMVGRLLGHSQIQTTMRYAHLADDPVRQAAEEN 373