Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 295 a.a., tyrosine-type recombinase/integrase from Methanococcus maripaludis JJ

 Score = 50.4 bits (119), Expect = 6e-11
 Identities = 48/235 (20%), Positives = 93/235 (39%), Gaps = 33/235 (14%)

Query: 117 VSHFNKENKSLS--PTYQNFQLNLLSGM--FSRLIKYKQWNLPNPLDD-IEPIKVNQRAL 171
           ++ +N  NK+    P  +N ++  L+ +  F       Q+   NP+   ++ +K  ++  
Sbjct: 53  INFYNGYNKAEDGRPVNKNTKIKRLNDVNRFYEWAVEHQYLFKNPVKTFVKTLKFEKKER 112

Query: 172 AYLDKADIQPFLQRLGGFESDGRSVSIPEIVLIAKICLATGARISEA--LSLERSQISEF 229
             L +  +Q  L ++  ++            +     L TG RISE   + L    + + 
Sbjct: 113 LNLSEKQVQTVLAKVMDYD----------YYVYTLFLLKTGVRISEFQNILLNDVDLEDR 162

Query: 230 KLTFVETKGKRIRSVPISE----------------NLYKEIMLASSSSTKIFSTTYGSAH 273
            +   + KG + R V I                  NL  +    + +  K+ +       
Sbjct: 163 SIYIRDGKGGKDRYVFIDNELLGYLKNYIEYRENLNLKTDCFFVTKNGKKVTNYAIDKFR 222

Query: 274 RYIKKALPDYVPEGQATHVLRHTFATHFMMNRGDILILQRILGHQKIEQTMAYAH 328
            Y+K+   D +P     HV RHTF T    +  ++++L +I+GH  +  T  Y H
Sbjct: 223 DYLKEVTKDKIPFDVTPHVFRHTFGTLACEDEMNLIVLSKIMGHSNLNTTSGYVH 277