Pairwise Alignments

Query, 345 a.a., integrase from Vibrio cholerae E7946 ATCC 55056

Subject, 397 a.a., integrase family protein (RefSeq) from Dinoroseobacter shibae DFL-12

 Score = 51.6 bits (122), Expect = 3e-11
 Identities = 48/219 (21%), Positives = 97/219 (44%), Gaps = 14/219 (6%)

Query: 134 FQLNLLSGMFSRLIKYKQ-WNL----PNPLDDIEPIKVNQRALAYLDKADIQPFLQRLGG 188
           +Q N   G+ S++    + W L     NP   +   +  +R   YL +A+++   + L  
Sbjct: 158 YQANRTLGVLSKMFNLAEVWGLRPDGSNPCRHVPKYRERKRE-RYLSQAELRRLGEVLAD 216

Query: 189 FESDGRSVSIPEIVLIAKICLATGARISEALSLERSQISEFKLTFVETK-GKRIRSVPIS 247
            E  G     P +V   K+ + TG R+ E  +L    ++   +   ++K G R   +P +
Sbjct: 217 CERSGSES--PYVVAAFKLLILTGCRLGEIQTLRWDYLTPNGMELPDSKTGARRIPLPSA 274

Query: 248 ENLYKEIMLASSSSTKIFSTTYGSAH----RYIKKALPDYVPEGQAT-HVLRHTFATHFM 302
                + +     +  + +      H    ++  + + D         H LRHT+A++ +
Sbjct: 275 ARAVLDALPHDPGNPYVIAGRIEGQHITDLQHPWRRIRDLAGLNDVRIHDLRHTYASNAV 334

Query: 303 MNRGDILILQRILGHQKIEQTMAYAHFSPDHLIQAVQLN 341
            +   I ++ R+LGH +++ TM YAH + D + +A + N
Sbjct: 335 SSGMPIQMVGRLLGHTQLQTTMRYAHLADDPVRKAAEEN 373