Pairwise Alignments

Query, 605 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 585 a.a., terminase from Pseudomonas fluorescens FW300-N2C3

 Score =  480 bits (1235), Expect = e-140
 Identities = 271/596 (45%), Positives = 356/596 (59%), Gaps = 40/596 (6%)

Query: 8   RQAARALYLKAWTPREIADELNLNSDRIIYYWADKFGWRDMLREQTIDEAIANRIQTLLE 67
           R+ ++ LY   W   EIA+      ++ ++ W  +  W      + I  A+  R+  L+ 
Sbjct: 12  RRQSKFLYWMGWRICEIAEATG-EKEKTLHSWKARDDWDRADNVERIGGALEARLVQLIL 70

Query: 68  VENPSK---PQLDMLDRLINHHVKLKKLRA--TEQPTQPNEAGTVSAQSGAHNSKSGSPK 122
            +N +     ++D+L R +    ++++ +   TE    PN A                 K
Sbjct: 71  KDNKTGGDFKEIDLLHRQLERQARIQRFQGGGTETDLNPNLA-----------------K 113

Query: 123 AESGTQTGDSGKQSAPSGKRKKVKNDVSEIT-EADFKLWHDSLFAYQHTMRNNLHQRTRN 181
              G              K+K  KND+SE   E   + + D  F YQ       +QRTR 
Sbjct: 114 RNEGP-------------KKKSPKNDISEDQIELLREAFIDGCFDYQKDWYRAGNQRTRV 160

Query: 182 ILKSRQIGATYYFAGEALEQAILTGDNQIFLSASRAQADVFRRYIVAIAKEFLGIEITGN 241
           ILKSRQIGATYYFA EA   A+ TG NQIFLSAS+ QA +FR YI A A+E +G+E+TG+
Sbjct: 161 ILKSRQIGATYYFAREAFIDALDTGRNQIFLSASKNQAYLFRGYIQAFAREVIGVELTGD 220

Query: 242 PSTLSNGAELHYLSTNGKTAQSYHGHVYIDEYFWIGKFDELNKVASAMATHKKWRKTYFS 301
           P  L NGAEL +L TN +TAQ YHG+ Y DE+FW  KF+ELNKVAS MA HKKWRKTYFS
Sbjct: 221 PIVLPNGAELFFLGTNARTAQGYHGNFYFDEFFWTFKFEELNKVASGMAMHKKWRKTYFS 280

Query: 302 TPSSKMHPAYSFWTGEKWRGDKTTRKNIEFPTFDELRDGGRLCPDKQWRYVVTIEDAAKG 361
           TPSS  H AY+FWTGE++   K   ++ +          GR C D+ WR +VTI DA +G
Sbjct: 281 TPSSMAHEAYTFWTGERFNKGKPAAQHTKVDVTHGALQQGRFCEDRLWRQIVTILDAERG 340

Query: 362 GCDLFDIEELREEYSETDFNNLFMCVFVDGASSIFEFNKIERCMVDSDI-W-QDYKPNAA 419
           GCDLFDIEELR EYS   F NL MC FVD  +SIF  + ++ CMVDS + W +DYKP A 
Sbjct: 341 GCDLFDIEELRREYSPEAFANLLMCEFVDDGASIFPLSVLQSCMVDSWVEWAEDYKPFAM 400

Query: 420 RPFGSREVWLGYDPSRTRDNAVLMVVAPPIVAVEKFRVLEKHTWRGLSFQHQASEISKVF 479
           RPFG R+VW+GYDP+ T D + L+V APP+V   KFRVLE+H +RG+ F  QA+ I  V 
Sbjct: 401 RPFGDRQVWVGYDPAETGDCSGLVVAAPPLVPGGKFRVLERHQFRGMDFAAQAAAIKGVC 460

Query: 480 ERFNVTYLGIDITGIGAGVHDLLVNKHPRETVAIHYSNENKNRLVMKMIDIIDGNRLQFD 539
           +R+ VTY+GID+TG+G+GV  L+    P  T    YS E K RLV+K  D+I   RL+FD
Sbjct: 461 DRYWVTYIGIDVTGLGSGVAQLVRQFFPAVT-TFSYSPEVKTRLVLKAYDVIHKGRLEFD 519

Query: 540 AGMKETAMAFMAIKRVATNSGNMMTFKAERSEQAGHADDFWALSHALINEPLDHST 595
           AG  + A + MAI++  T  G   T+ A R++  GHAD  WAL HAL NEPL+  T
Sbjct: 520 AGWTDMAQSLMAIRKTITAGGRQFTYTAGRNDNTGHADLAWALFHALQNEPLEGQT 575