Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 304 a.a., scaffolding protein from Pseudomonas fluorescens FW300-N2E3

 Score =  109 bits (272), Expect = 9e-29
 Identities = 96/302 (31%), Positives = 142/302 (47%), Gaps = 18/302 (5%)

Query: 1   MPKT--SDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYR---SAWAV 55
           MP++  S W  VAT+GTT +DGR I    + D+AE Y P +Y A+IW +H R   S   V
Sbjct: 1   MPRSLVSFWKRVATSGTT-ADGREILPQELRDIAETYKPSKYTAVIWCDHERWSGSHGTV 59

Query: 56  FEGKNWGEVEELKAGKFKDKLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCY 115
           +  +   E ++L+ G+    + L A+L PN  LL  N  GQKLF+SIE  P++   G+ Y
Sbjct: 60  YAVRLVEEGDDLEEGQ----IALEAQLKPNDRLLYLNDQGQKLFTSIEITPNFAGSGKAY 115

Query: 116 LLGLAVTDSPASSGTTRLRFSRVQGQYTELECSALEEWDLTPFYSQNAEFSKFFAMCRSF 175
           L GLAVTD PAS GT  L FS+   + T    S++E   L     Q  E  K        
Sbjct: 116 LSGLAVTDEPASLGTQELYFSKKTNK-TAYYASSVELGSLRDTQPQ-GELQKLLTAFTGL 173

Query: 176 FNR---EQPNETNQPQSEDEEPMKQEQFDQMMGAINGIATKQNELESKFNTFSAQKPETK 232
           F R   E+     Q  +E + PM +     +   I         L++  + F+   PE +
Sbjct: 174 FKRFGIEEIPANPQSPTESKPPMDEATAKAIQALIEQQLIVTAGLQALVDGFAEVVPEIE 233

Query: 233 GEEPEGDGKDKETNGMTPEQFSKLTETL--DSIAQKQADLETKFTQLSQTGPDGQGADKS 290
            E  +      +    T E+   L+      ++    A L+ +FT L  T P G+   ++
Sbjct: 234 QEPVDDVQSAVDVIIATAEEEKNLSRNSGNKAVLAGLAKLQKQFTALQNT-PTGRQLPRN 292

Query: 291 GG 292
            G
Sbjct: 293 PG 294