Pairwise Alignments

Query, 299 a.a., capsid protein from Vibrio cholerae E7946 ATCC 55056

Subject, 280 a.a., capsid protein from Herbaspirillum seropedicae SmR1

 Score = 92.4 bits (228), Expect = 1e-23
 Identities = 60/140 (42%), Positives = 79/140 (56%), Gaps = 5/140 (3%)

Query: 1   MPKTSDWVIVATAGTTVSDGRVISESWINDMAELYDPEEYKALIWPEHYRSAWAVFEGKN 60
           M   S +  VAT G T +DGR IS   I  MA+ Y+ + Y A +W EH RS       K 
Sbjct: 1   MATKSKFFRVATEGAT-TDGRSISREQIQQMADNYNVKTYGARVWVEHLRSLLPDGPFKA 59

Query: 61  WGEVEELKAGKFKD----KLRLFAKLTPNHYLLEANKDGQKLFSSIEPEPDYKKEGRCYL 116
           +G+V  LKA +       +L LFA++ P   L+  NKD QK+++SIE    +      YL
Sbjct: 60  YGDVLALKAEEVDTDAGKRLALFAQIEPTPALVAMNKDRQKIYTSIELADKFADISSAYL 119

Query: 117 LGLAVTDSPASSGTTRLRFS 136
           +GLAVTDSPAS GT  L+FS
Sbjct: 120 VGLAVTDSPASLGTEILQFS 139