Pairwise Alignments

Query, 336 a.a., phage major capsid protein, P2 family from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., phage major capsid protein, P2 family from Rahnella sp. WP5

 Score =  112 bits (279), Expect = 2e-29
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 26/323 (8%)

Query: 5   LTQSAREYMDNFAQQLAKSYGVS--NVAELFNVSPQLETKLRAAITESAEFLKMITVTTV 62
           + ++ R   + +  +LA+  GV   ++++ F+V P +   L   + ES+EFL  I +  V
Sbjct: 1   MRKNTRFKFNAYLSRLAELNGVDVEDLSKKFSVEPSVTQTLITTVQESSEFLSRINMVPV 60

Query: 63  DQIEGQVVDVGVSG--LYTGRKAGGRFTKQV---GVGGHKYKLAETDSCAAITWAMLCQW 117
           D+ EG+ + +GV+G    T    GG   K      +   KYK  + +    I +  L  W
Sbjct: 61  DEQEGEKIGLGVTGSIASTTDTDGGSERKTADFQALASRKYKCEQVNFDFHIRYNTLDLW 120

Query: 118 ANQGGRDQFMKHLTEFSNQMFALDIMRIGWNGVSAEADTDPSANPLGQDVNEGWIAFVKN 177
           A       F   L +   +  ALD +  G+NGVS    +D S   + QDV  GW+  ++N
Sbjct: 121 ARY---QDFQTRLRDAIAKRQALDYIMAGFNGVSRAETSDRSKFQMLQDVAVGWLQKLRN 177

Query: 178 RKASQVVDVDVYFDET------------NGDYRTLDAMASDIINNQIHPMFRNDPRLTVF 225
             A +V  +D   DET            NGD+  +DA   +  +  +      DP L V 
Sbjct: 178 EAAERV--MDKITDETGAVVSATVRIGKNGDFENIDAAVMNATDFLLDAWHSEDPGLVVI 235

Query: 226 VGSGLIGAAQAKLYDKADKPSEQIAAQKL--DKTIAGRPAYVPPFLPDNAMVVTIPENLQ 283
            G  ++      L +K+ + SE++A   +   K I   PA   P+ PDNA+++T  +NL 
Sbjct: 236 CGRKMLSDKYFPLINKSQENSEKLAGDIIVSQKRIGNLPAVRVPYFPDNALLITRLDNLS 295

Query: 284 VLTQHGTAQRKAKHESDRKQFEN 306
           +     + +R  +  + R + EN
Sbjct: 296 IYIMDSSHRRHIEEVARRDRIEN 318