Pairwise Alignments

Query, 238 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., terminase from Pseudomonas fluorescens FW300-N2E3

 Score = 96.7 bits (239), Expect = 4e-25
 Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 28/235 (11%)

Query: 3   LSPAARHKLAVLATPAAAAHAAAA--------ESLDS-----LHLRLVE--FEQDKQVLK 47
           +S A  HK   LA  +AAA A A+        E+L S      HL L E   +QD + L 
Sbjct: 1   VSLALAHKRRTLALDSAAAVALASVAVAYTPGEALSSPANAKKHLLLQEAALDQDLERLS 60

Query: 48  GFVQISEKVNHKRDVLIPKYKPLAEKYLAAGESYQNPIFTDLIVWLFDIGDLETAVEWLF 107
               ++ +   KR+ L+PKY+   ++Y+ +G    N +   ++VWLFD    E  +E   
Sbjct: 61  AIKGLAGRQALKREELLPKYQDFIQRYMESGLVMPNRVLVQVMVWLFDTEQFEDGLELAD 120

Query: 108 KAIELNLPTPENFKRSSWAVICADEVLKWAEQQLPNGHSIEPYFSRVFEKIDKEWKLPEK 167
            AIE     PE FKR       AD V+ WA  +     S EPY S +  ++D EW L E+
Sbjct: 121 FAIEQGQQMPERFKRRDIQTFVADAVIDWAYAEYNAKRSPEPYLSNLLPRVDGEWDLTEQ 180

Query: 168 LEAKWYKFAGYGLLMNEKGE-------------PKPSSIGDLERLQKAKALLLTA 209
           + +K++K  G   +  E+ +             PK  +   +E+ +KA A   TA
Sbjct: 181 IPSKYHKLIGMRAMEAEEWKTALEHLERSTELYPKAGNDTRIEKCRKALARQETA 235