Pairwise Alignments

Query, 238 a.a., terminase from Vibrio cholerae E7946 ATCC 55056

Subject, 236 a.a., terminase endonuclease subunit from Ralstonia sp. UNC404CL21Col

 Score = 68.6 bits (166), Expect = 1e-16
 Identities = 64/235 (27%), Positives = 105/235 (44%), Gaps = 8/235 (3%)

Query: 4   SPAARHKLAVLATPAAAAHAAA--AESLDSLHLRLVEFEQDKQVLKGFVQISEKVNHKRD 61
           SPA  H L   A  AA A   A      +   L L +  + K+ LK    +  K + KR 
Sbjct: 3   SPARNHFLRASAALAAQAEQEANPLRHANGYELMLAQLAEHKRQLKQVQSVERKADTKRR 62

Query: 62  VLIPKYKPLAEKYLAAGESYQNPIFTDLIVWLFDIGDLETAVEWLFKAIELNLPTPENFK 121
           +L P+Y    E  L A    Q+ IF  ++VW  D+GD   A+     AI   L  P+ ++
Sbjct: 63  ML-PEYAAWVEGVLQADSGTQDDIFMTVLVWRIDVGDFAGALPLADYAIRHKLAMPDQYQ 121

Query: 122 RSSWAVICADEVLKWAEQQLPNGHSIEPYFSRVFEKIDKEWKLPEKLEAKWYKFAGYGLL 181
           R++ A + A+E      +      S +       E + ++  +P+++ AK +K  GY + 
Sbjct: 122 RTT-ACLIAEEFANMVLKDPAAIQSADVEALIAVEALVRDQDMPDEVRAKLHKALGYVIA 180

Query: 182 MNEKGEPKPSSIGDLERLQKAKALLLTAHEKYNRIMVKTKIDQIDMRI-NAINEG 235
               G  + ++    E   +A A L  A E +++  VK  I++I+  I NA   G
Sbjct: 181 AVATGHDQATANACRE---EALAHLRRALELHDKSGVKKDIERIERDIKNAAKPG 232