Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 283 a.a., Flagellin protein FlaA from Pseudomonas fluorescens FW300-N2E2

 Score =  175 bits (444), Expect = 1e-48
 Identities = 86/154 (55%), Positives = 120/154 (77%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV+++  Q+ L  A++A  +SM RLSSG KINSAKDDAAGLQI+ R+  Q RG
Sbjct: 1   MALTVNTNVTSLNVQKNLNRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRMTSQIRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
             VA++NANDGIS+AQTAEGA++E+TNILQRMR+L++Q+ N SN  ADR A+ +E   ++
Sbjct: 61  QTVAIKNANDGISIAQTAEGALQESTNILQRMRELAVQARNDSNGTADREALNKEFAQMS 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNG 154
           DEL R+AE+T+  G  L++G+  T +FQ+G++ G
Sbjct: 121 DELTRIAESTNLNGKNLIDGSAGTMTFQVGSNTG 154



 Score =  101 bits (251), Expect = 3e-26
 Identities = 99/301 (32%), Positives = 140/301 (46%), Gaps = 55/301 (18%)

Query: 110 VAIQEEITALNDE--LNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSD 167
           + +   +T+LN +  LNR ++  S    +L +G       +I +   +A  L I    + 
Sbjct: 3   LTVNTNVTSLNVQKNLNRASDALSTSMTRLSSG------LKINSAKDDAAGLQIATRMTS 56

Query: 168 NALMGGKTYQAANGKDKNWGVEAGKT------DLTITLKDKREGDVTISINAKEGDDIEE 221
              + G+T    N  D   G+   +T      + T  L+  RE  V    ++    D E 
Sbjct: 57  Q--IRGQTVAIKNAND---GISIAQTAEGALQESTNILQRMRELAVQARNDSNGTADREA 111

Query: 222 LATYINGQTD---MIKASVDEEGKLQLFTDNNRIDGAATFGGALAGELG--IGAAQDVTV 276
           L       +D    I  S +  GK       N IDG+A   G +  ++G   GA   +T+
Sbjct: 112 LNKEFAQMSDELTRIAESTNLNGK-------NLIDGSA---GTMTFQVGSNTGATNQITL 161

Query: 277 D--------TLDV-----------TTVGGAQESVAIV--DAALKYVDSHRAELGAFQNRF 315
                    TL V           +T   A  S AIV  DAAL  ++S RA+LGA QNR 
Sbjct: 162 TLDSGFDAATLSVDSAAIAITGSDSTTAEASTSAAIVAIDAALATINSSRADLGAAQNRL 221

Query: 316 NHAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALAL 375
              I+NL N+NEN  A+  R++DTDFA ET  LTK Q L QAS+SVLAQA Q P++ L L
Sbjct: 222 TSTISNLQNVNENAAAALGRVQDTDFAAETAQLTKQQTLQQASTSVLAQANQLPSAVLKL 281

Query: 376 L 376
           L
Sbjct: 282 L 282