Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 281 a.a., Flagellin protein FlaA from Pseudomonas fluorescens FW300-N1B4

 Score =  163 bits (412), Expect = 6e-45
 Identities = 88/193 (45%), Positives = 129/193 (66%), Gaps = 3/193 (1%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTN ++++ Q+ L  A++A  +SM RLSSG KINSAKDDAAGLQI+ R+  Q RG
Sbjct: 1   MALTVNTNTTSLSVQKNLNRASDALSTSMTRLSSGLKINSAKDDAAGLQIATRMTSQIRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
             +A++NANDG+S+AQTAEGA++E+TNILQRMR++++QS N SN  ADR A+ +E     
Sbjct: 61  QTMAIKNANDGVSIAQTAEGALQESTNILQRMREIAVQSRNDSNGTADRTALDKEYQQSI 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGAD--NGEAVMLNIKDMRSDNAL-MGGKTYQ 177
            EL R+A++T+  G  L++GT     FQ+G++  +   + L +      +AL M G T  
Sbjct: 121 AELTRIAQSTNLNGKALIDGTAGAMEFQVGSNTTSDNQITLTLSTSFDASALGMTGTTIS 180

Query: 178 AANGKDKNWGVEA 190
             +    +  V+A
Sbjct: 181 GVSNTANHSSVDA 193



 Score =  100 bits (249), Expect = 5e-26
 Identities = 63/146 (43%), Positives = 87/146 (59%), Gaps = 24/146 (16%)

Query: 252 IDGAATFGGALAGELGIGAAQD----VTVDT--------LDVTTVGGAQE---------S 290
           IDG A   GA+  ++G     D    +T+ T        +  TT+ G            S
Sbjct: 138 IDGTA---GAMEFQVGSNTTSDNQITLTLSTSFDASALGMTGTTISGVSNTANHSSVDAS 194

Query: 291 VAIVDAALKYVDSHRAELGAFQNRFNHAINNLDNINENVNASKSRIKDTDFAKETTALTK 350
           ++ +DAAL  +++ RA+LGA QNRF+  I+NL NINEN +A+ SR++DTDFA ET  LTK
Sbjct: 195 ISAIDAALANINATRADLGAAQNRFSTTISNLQNINENASAALSRVQDTDFAAETAQLTK 254

Query: 351 AQILSQASSSVLAQAKQAPNSALALL 376
            Q L QAS++VLAQA Q P++ L LL
Sbjct: 255 QQTLQQASTAVLAQANQLPSAVLKLL 280