Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 278 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  156 bits (394), Expect = 7e-43
 Identities = 82/172 (47%), Positives = 115/172 (66%), Gaps = 2/172 (1%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA++++TN S++  Q  L+   N   ++ +RL +G +INSA DDAAGLQI+ RLN   RG
Sbjct: 1   MALSIHTNYSSLITQTNLSKTNNTLGTNQQRLGTGLRINSAADDAAGLQIATRLNAGVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           + VA+RN ND +SM QTAEGA  E T+ILQRM+DL+ QSANG+N++ DR A++ E   L 
Sbjct: 61  MAVAIRNTNDAVSMLQTAEGAFNEATDILQRMKDLATQSANGTNTQKDRDALEAEFVELG 120

Query: 121 DELNRVAETTSFGGNKLLNG--TFATKSFQIGADNGEAVMLNIKDMRSDNAL 170
            ELN +A  T + G+ LL+G    A  +FQIGA + E + + I D +   AL
Sbjct: 121 KELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTKIAAAL 172



 Score = 80.5 bits (197), Expect = 5e-20
 Identities = 63/169 (37%), Positives = 85/169 (50%), Gaps = 22/169 (13%)

Query: 231 DMIKASVDEEGK-LQLFTDNNRIDGAATF-GGALAGEL----GIGAAQDVTVDTLDV--- 281
           D ++A   E GK L     N +  G A   GG LA ++    G  +A+ +TV   D    
Sbjct: 110 DALEAEFVELGKELNNIATNTKYAGDALLDGGTLAADINFQIGASSAEVMTVAIADTKIA 169

Query: 282 -------TTVGG---AQESVAIVDA---ALKYVDSHRAELGAFQNRFNHAINNLDNINEN 328
                  TTV G   A  +VA +DA   AL  + + R  LGA  NR NH  NNL N+ +N
Sbjct: 170 AALTQMTTTVPGLSVAAGAVATIDALETALDDLGATRGALGANINRLNHTANNLANMKDN 229

Query: 329 VNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALLG 377
              +K RI D DFA E+  +TK  +L Q+  S+L QA Q P+  + LLG
Sbjct: 230 TEMAKGRIMDADFASESANMTKNSMLMQSGISMLKQAGQMPSMVMGLLG 278