Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 394 a.a., Flagellin and related hook-associated proteins from Pseudomonas stutzeri RCH2

 Score =  298 bits (763), Expect = 2e-85
 Identities = 173/398 (43%), Positives = 252/398 (63%), Gaps = 27/398 (6%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTN+ ++  QR L S++NA  +SM+RLS+G +INSAKDDAAGLQI+NRL  Q  G
Sbjct: 1   MALTVNTNIPSLNTQRNLNSSSNALATSMQRLSTGSRINSAKDDAAGLQIANRLTSQVNG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           LGVAVRNANDGIS+AQTAEGA++++TNILQRMRDL+LQSANGSNS ++R A+  E+  L 
Sbjct: 61  LGVAVRNANDGISLAQTAEGALQQSTNILQRMRDLALQSANGSNSTSEREALNSEVGQLK 120

Query: 121 DELNRVAETTSFGGNKLLNGTFATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAAN 180
            EL+R++ TT+FGG +LL+G+F   SFQ+G+   E + + I +M S +  +  K ++  +
Sbjct: 121 KELDRISNTTTFGGRQLLDGSFGVASFQVGSAANEIISVGIAEMSSKS--LSAKFFENTS 178

Query: 181 GKD--KNWGVEAGKTDLTITLKDKREGDVTISINAKEGDD----IEELATYINGQTDMIK 234
            K         AG+ D+  T+  K      ++ N   GDD     +++A  IN     + 
Sbjct: 179 PKAAVATTVTTAGEIDVGFTVNGKA---YAVTANVAVGDDEKTVNQKIAAAINDTNSGVG 235

Query: 235 ASVDEEGKLQLFTDN-----NRIDGAATFGGALAGELGIG-----------AAQDVTVDT 278
           A V ++  L + +       N +   +      AG++  G            A    V  
Sbjct: 236 AFVKDDNTLSIVSRETEAGANSLSALSIAISTTAGKIPAGVTNPAAATLAATATSQKVSG 295

Query: 279 LDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFNHAINNLDNINENVNASKSRIKD 338
           +D+ +   AQ++V + D A++ +D+ RA+LGA QNRF++ I NL NI+ENV+A++ RI+D
Sbjct: 296 VDLLSAENAQKAVLVFDKAIQAIDAQRADLGAVQNRFDNTIANLQNISENVSAARGRIED 355

Query: 339 TDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           TDFA ET  L+K QIL QA +++LAQAKQ P + L+LL
Sbjct: 356 TDFAAETANLSKNQILQQAGTAILAQAKQLPQAVLSLL 393