Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin-like protein (RefSeq) from Shewanella amazonensis SB2B

 Score =  182 bits (463), Expect = 7e-51
 Identities = 98/186 (52%), Positives = 129/186 (69%), Gaps = 1/186 (0%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV++M AQ+ L  ++    +SMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSMKAQKNLNMSSGQLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L V +RNANDGIS+AQ AEGAM+E TN+LQRMRDLS+Q+ NG+NS  D  AIQ+EIT L 
Sbjct: 61  LEVGMRNANDGISIAQIAEGAMQEQTNMLQRMRDLSIQAENGANSADDLQAIQDEITQLI 120

Query: 121 DELNRVAETTSFGGNKLLNGTF-ATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAA 179
            E+  +  +T+FG  KL+ G F A K FQ+G   GE V + +    + +  +   T   +
Sbjct: 121 TEITAIGNSTAFGNTKLMTGDFSAGKKFQVGHQEGEDVTITVNTNNATSLSVNAVTVLTS 180

Query: 180 NGKDKN 185
            G++ +
Sbjct: 181 AGRNSS 186



 Score =  100 bits (248), Expect = 6e-26
 Identities = 65/179 (36%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 209 ISINAKEGDDIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFG-----GALA 263
           +SI A+ G +  +    I  +   +   +   G    F +   + G  + G     G   
Sbjct: 95  LSIQAENGANSADDLQAIQDEITQLITEITAIGNSTAFGNTKLMTGDFSAGKKFQVGHQE 154

Query: 264 GE-----LGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFNHA 318
           GE     +    A  ++V+ + V T  G   S+  +D A+K +D+ RA LGA QNR  H 
Sbjct: 155 GEDVTITVNTNNATSLSVNAVTVLTSAGRNSSLLKIDNAIKKIDTQRAALGAVQNRLAHN 214

Query: 319 INNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALLG 377
           I+N  N   NV  +KSRI D DFAKET+A+TK Q+L Q  S++LAQA Q P  AL+LLG
Sbjct: 215 ISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLPQVALSLLG 273