Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (448), Expect = 4e-49
 Identities = 92/162 (56%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV+++ AQ+ L ++ +   +SMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNASGSNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L V +RNAND IS+AQ +EGAM+E TN+LQRMRDLS+Q+ NG+NS AD  A+++E+ AL 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQAENGANSTADLQALKDEMDALA 120

Query: 121 DELNRVAETTSFGGNKLLNGTF-ATKSFQIGADNGEAVMLNI 161
            E+  +   T+FG  KLLNG F A K+FQ+G  +GE + +++
Sbjct: 121 TEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQDGEDIKVSV 162



 Score =  104 bits (260), Expect = 2e-27
 Identities = 67/178 (37%), Positives = 97/178 (54%), Gaps = 10/178 (5%)

Query: 209 ISINAKEGDDIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFG-----GALA 263
           +SI A+ G +       +  + D +   +   G    F D   ++G  + G     G   
Sbjct: 95  LSIQAENGANSTADLQALKDEMDALATEITAIGTNTAFGDTKLLNGDFSAGKTFQVGHQD 154

Query: 264 GE-----LGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFNHA 318
           GE     +G   A  ++V++L V T  G   ++  +DAA+K +D+ RA+LGA QNR  H 
Sbjct: 155 GEDIKVSVGKSDAAALSVNSLTVLTSAGRASALTKIDAAIKKIDTSRAKLGAVQNRLAHN 214

Query: 319 INNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           I+N  N   NV  +KSRI D DFAKET+A+TK Q+L Q  S++LAQA Q P  AL+LL
Sbjct: 215 ISNSANTQANVADAKSRIVDVDFAKETSAMTKNQVLQQTGSAMLAQANQLPQVALSLL 272