Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin domain-containing protein (RefSeq) from Shewanella loihica PV-4

 Score =  184 bits (468), Expect = 2e-51
 Identities = 102/202 (50%), Positives = 138/202 (68%), Gaps = 5/202 (2%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+NVNTNV++M AQ+ L +++    +SMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAINVNTNVTSMKAQKNLNTSSQNLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L V +RNAND IS+AQ +EGAM+E TN+LQRMRDLS+QS NG+NS AD  A+++E+  L 
Sbjct: 61  LEVGMRNANDAISIAQISEGAMQEQTNMLQRMRDLSIQSENGANSTADLQALKDEMDQLA 120

Query: 121 DELNRVAETTSFGGNKLLNGTF-ATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAA 179
           +E+  +  +T+FG  KLL G F A K FQ+G  +GE V +++  + +    +   T   +
Sbjct: 121 EEITAIGNSTAFGNTKLLTGEFSAGKLFQVGHQDGEDVTISVGTLNAGVLSVNSLTVLTS 180

Query: 180 NGKDKNWGVEAGKTDLTITLKD 201
            G+D       GK D  I + D
Sbjct: 181 AGRDS----AIGKIDAAIKVID 198



 Score =  103 bits (256), Expect = 7e-27
 Identities = 64/181 (35%), Positives = 95/181 (52%), Gaps = 14/181 (7%)

Query: 209 ISINAKEGDDIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFGGALAGELGI 268
           +SI ++ G +       +  + D +   +   G    F +   + G  + G     ++G 
Sbjct: 95  LSIQSENGANSTADLQALKDEMDQLAEEITAIGNSTAFGNTKLLTGEFSAGKLF--QVGH 152

Query: 269 GAAQDVT------------VDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFN 316
              +DVT            V++L V T  G   ++  +DAA+K +D+ RA+LGA QNR  
Sbjct: 153 QDGEDVTISVGTLNAGVLSVNSLTVLTSAGRDSAIGKIDAAIKVIDTQRAKLGAVQNRLA 212

Query: 317 HAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           H I+N  N   NV  +KSRI D DFAKET+ +TK Q+L Q  S++LAQA Q P  AL+LL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSTMTKNQVLQQTGSAMLAQANQLPQVALSLL 272

Query: 377 G 377
           G
Sbjct: 273 G 273