Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 273 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  185 bits (470), Expect = 1e-51
 Identities = 103/208 (49%), Positives = 135/208 (64%), Gaps = 5/208 (2%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV++M AQ+ L ++ +   +SMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSMKAQKNLNTSNSGLSTSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L V +RNAND IS+AQ AEGAM+E TN+LQRMRDL++QS NG+NS AD V+I+ E+  L 
Sbjct: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTIQSENGANSTADLVSIKAEMDQLA 120

Query: 121 DELNRVAETTSFGGNKLLNGTF-ATKSFQIGADNGEAVMLNIKDMRSDNALMGGKTYQAA 179
            E++ +  +T+FG  KLL GTF A K FQ+G   GE + + +K     +  +G       
Sbjct: 121 TEIDSIGNSTAFGNTKLLTGTFSAGKVFQVGHQEGEDIKVTVKASNKTSLSVGALN---- 176

Query: 180 NGKDKNWGVEAGKTDLTITLKDKREGDV 207
           N    N      K D  I   D +  D+
Sbjct: 177 NATSANRASSLAKIDAAIKTIDSQRADL 204



 Score =  107 bits (267), Expect = 4e-28
 Identities = 66/181 (36%), Positives = 95/181 (52%), Gaps = 14/181 (7%)

Query: 209 ISINAKEGDDIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFGGALAGELGI 268
           ++I ++ G +       I  + D +   +D  G    F +   + G  TF      ++G 
Sbjct: 95  LTIQSENGANSTADLVSIKAEMDQLATEIDSIGNSTAFGNTKLLTG--TFSAGKVFQVGH 152

Query: 269 GAAQDV------------TVDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFN 316
              +D+            +V  L+  T      S+A +DAA+K +DS RA+LGA QNR  
Sbjct: 153 QEGEDIKVTVKASNKTSLSVGALNNATSANRASSLAKIDAAIKTIDSQRADLGAVQNRLA 212

Query: 317 HAINNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           H I+N  N   NV  +KSRI D DFAKET+A+TK Q+L Q  S++LAQA Q P  AL+LL
Sbjct: 213 HNISNSANTQANVADAKSRIVDVDFAKETSAMTKYQVLQQTGSAMLAQANQLPQVALSLL 272

Query: 377 G 377
           G
Sbjct: 273 G 273