Pairwise Alignments

Query, 377 a.a., flagellin C from Vibrio cholerae E7946 ATCC 55056

Subject, 272 a.a., flagellin (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  183 bits (464), Expect = 5e-51
 Identities = 104/210 (49%), Positives = 140/210 (66%), Gaps = 9/210 (4%)

Query: 1   MAVNVNTNVSAMTAQRYLTSATNAQQSSMERLSSGYKINSAKDDAAGLQISNRLNVQSRG 60
           MA+ VNTNV+++ AQ+ L ++ +   +SMERLSSG +INSAKDDAAGL ISNRLN Q RG
Sbjct: 1   MAITVNTNVTSLKAQKNLNTSASDLATSMERLSSGLRINSAKDDAAGLAISNRLNSQVRG 60

Query: 61  LGVAVRNANDGISMAQTAEGAMKETTNILQRMRDLSLQSANGSNSKADRVAIQEEITALN 120
           L V +RNAND IS+AQ AEGAM+E TN+LQRMRDL++QS NG+NS AD  A++ E+  L 
Sbjct: 61  LEVGMRNANDAISIAQIAEGAMQEQTNMLQRMRDLTVQSENGANSSADLSALKAEMDQLA 120

Query: 121 DELNRVAETTSFGGNKLLNGTF-ATKSFQIGADNGEAVMLNIKDMRSDNALMG--GKTYQ 177
           +E++ + +TT+FG  KLL G F A K+FQ+GA +GE + + +K     +  +G  G T  
Sbjct: 121 NEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQDGEDIKVTVKASNKSSLSVGSLGNTTS 180

Query: 178 AANGKDKNWGVEAGKTDLTITLKDKREGDV 207
           AA            K D  I   D +  D+
Sbjct: 181 AARASSLK------KIDAAIKTIDAQRADL 204



 Score =  103 bits (258), Expect = 4e-27
 Identities = 64/178 (35%), Positives = 95/178 (53%), Gaps = 10/178 (5%)

Query: 209 ISINAKEGDDIEELATYINGQTDMIKASVDEEGKLQLFTDNNRIDGAATFG-----GALA 263
           +++ ++ G +     + +  + D +   +DE GK   F     + G  + G     GA  
Sbjct: 95  LTVQSENGANSSADLSALKAEMDQLANEIDEIGKTTAFGTTKLLAGGFSAGKNFQVGAQD 154

Query: 264 GE-----LGIGAAQDVTVDTLDVTTVGGAQESVAIVDAALKYVDSHRAELGAFQNRFNHA 318
           GE     +       ++V +L  TT      S+  +DAA+K +D+ RA+LGA QNR  H 
Sbjct: 155 GEDIKVTVKASNKSSLSVGSLGNTTSAARASSLKKIDAAIKTIDAQRADLGAIQNRLAHN 214

Query: 319 INNLDNINENVNASKSRIKDTDFAKETTALTKAQILSQASSSVLAQAKQAPNSALALL 376
           I+N  N   NV  +KSRI D DFAKET+ +TK Q+L Q  S++LAQA Q P  AL+LL
Sbjct: 215 ISNSANTQANVADAKSRIVDVDFAKETSQMTKNQVLQQTGSAMLAQANQLPQVALSLL 272