Pairwise Alignments

Query, 362 a.a., peptide chain release factor 1 from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., peptide chain release factor RF-2 (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  143 bits (360), Expect = 7e-39
 Identities = 96/319 (30%), Positives = 155/319 (48%), Gaps = 13/319 (4%)

Query: 45  LEEITQCFQAYQQAKEDLVAAEEMAQEDDAEMREMAQD-EIKAAKAAIERLTDELQILLL 103
           ++++ +    Y + K     A+E+    D    E+  + ++ AA A      + L++  +
Sbjct: 4   VKDLQKWIDGYNEVK---TLADELELSFDFYKEELVTEGDVDAAYAKASEAVEALELKNM 60

Query: 104 PKDPNDDRNCFLEIRAGAGGDEAGIFAGDLFRMYSRFAEKKGWRIEVMSSSEAEHGGYKE 163
            +D  D   C L+I +GAGG E+  +A  L RMY R+AE  G++  + +  E +  G K 
Sbjct: 61  LRDEADQMACVLKINSGAGGTESQDWASMLMRMYLRYAETNGYKATIANLQEGDEAGIKT 120

Query: 164 MIAKVNGDGAYGTLKFESGGHRVQRVPATEAQGRIHTSACTVAVMPEIPEAEIPEIKASD 223
               + GD AYG LK E+G HR+ RV    AQG+  TS  +V V P + ++    I  + 
Sbjct: 121 CTINIEGDFAYGYLKGENGVHRLVRVSPYNAQGKRMTSFASVFVTPLVDDSIEVNILPAC 180

Query: 224 LKIDTFRSSGAGGQHVNTTDSAIRI--------THLPTGIVVECQDERSQHKNKAKAMSV 275
           +  DTFRS GAGGQ+VN  +S +R+        T     I++E  + R Q KN+  AM  
Sbjct: 181 ISWDTFRSGGAGGQNVNKVESGVRLRYQYKDPYTGEEEEILIENTETRDQPKNRENAMRQ 240

Query: 276 LAARIAQAEESKRAAEISDTRRNLLGSGDRSDRIRTYNYPQGRVSDHRINLTVYRLTEVM 335
           L + +   E   R AE +          +   +IR+Y +   RV DHR N     +  VM
Sbjct: 241 LRSILYDKELQHRMAEQAKVEAG-KKKIEWGSQIRSYVFDDRRVKDHRTNYQTSDVNGVM 299

Query: 336 EGDMQSLIDPVIHEHQADQ 354
           +G ++  I   + E  + +
Sbjct: 300 DGKIEEFIKAYLMEFSSQE 318