Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 348 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score =  120 bits (302), Expect = 4e-32
 Identities = 92/321 (28%), Positives = 168/321 (52%), Gaps = 18/321 (5%)

Query: 21  LVAILLFGFITIYFFGHLIAPL---LVAIVLAYLLEWPVTQLRRLRIPRTLAVIIVITVF 77
           L AILL  +  +  + +   P+   L A +L+++L  PV  L R R+PR LAV+I++ V 
Sbjct: 21  LPAILLNAWCVLLIWDYFRGPISIFLSAALLSFILGLPVRALERWRVPRLLAVLIILAVI 80

Query: 78  TGLMILAVFGLVPTIWKQVGNLINDVPNMYN-GTQKFITSLPERYPELAHLEI-VESVIG 135
             L++L    L+P +  QV  L N +P   N G Q+F   L E++P  + + + + +V+G
Sbjct: 81  VVLLLLVTVTLLPILINQVSALANTLPRSLNDGFQQF--QLLEQHPFFSRIPLDLRAVLG 138

Query: 136 NAKNKVLGMGESVVKGSLASLVSLATLGVYLILVPLLVFFLLKDKQEMLRMASGILP-RN 194
              +++    +++    L  L+ +A+  +  +L  ++ F+LL    E+       LP R 
Sbjct: 139 TVVSRLSEQLQALTSRLLELLLGVASGALQTMLTLVISFYLLLRGDEVWDGLYNWLPVRW 198

Query: 195 RKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLIPY 254
           R  A    E       NY+  ++    ++G+ + I   +L LR+ +LL   +GL  + P+
Sbjct: 199 RSRARSALE---LSFRNYLLSQMTIAFLIGSSATIVLLLLGLRFWLLLGCGIGLLAIFPF 255

Query: 255 IGAAAVTVPVAIVALFQ--WGLTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPVAI 312
            G+ ++ V +AIV +F   W     F  L+  +G  Q ++ N++ P LF +++ +HPV +
Sbjct: 256 GGSISI-VSLAIVQMFSNPW---LGFRILVFCWGTDQLIE-NLIAPRLFGKSIGVHPVWV 310

Query: 313 IIAVLVFGGLWGFWGVFFAIP 333
           ++A+L+   L G  GV  A+P
Sbjct: 311 LMAILIGAQLGGLLGVILAVP 331