Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 387 a.a., hypothetical protein from Synechococcus elongatus PCC 7942

 Score = 84.3 bits (207), Expect = 5e-21
 Identities = 85/332 (25%), Positives = 157/332 (47%), Gaps = 43/332 (12%)

Query: 42  LLVAIVLAYLLEWPVTQLR-RLRIPR--TLAVIIV-ITVFTGLMILAVFGLVPTIWKQVG 97
           L  A+VLA ++     QL+ RLR  R  +LAV ++ IT+  GL+I     L+P +  Q  
Sbjct: 29  LFAAVVLAVIINHLARQLQQRLRWSRRTSLAVTLLGITIGGGLLIAL---LLPPLLVQFQ 85

Query: 98  NLINDVPNMYNGTQKFITSLPERYPELAHL-----------EIVESVIGNAKNKVLGMGE 146
            L+   P    G  K +T + ER  ++  +             V+S I   ++ + G G+
Sbjct: 86  ELLRLAPQ---GFAKLLTWVEERLVDVVKILPGFSDDRSARSFVDSTI---RDLIQGFGD 139

Query: 147 S------------VVKGSLASLVSLATLGVYLILVPLLVFFLLKDKQEMLRMASGILPR- 193
                        + +  L+   +       L+LV +L+  +L + Q   +    +LP  
Sbjct: 140 RRNWSSFSQQLGPLARNFLSIFNNTLAAAAQLLLVIVLMLMMLSNPQAYRQTFLRLLPSF 199

Query: 194 NRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAVGLSVLIP 253
            R+ A++V       +S++  G ++    +  +S++   IL ++ +++ A+  G   LIP
Sbjct: 200 YRRRADEVLSACEISLSDWFLGILISSSAIAILSWLGLVILGVKLALVNAIIAGFLNLIP 259

Query: 254 YIGAAAVTV-PVAIVALFQ-WGLTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVNLHPVA 311
            +G     V P++IV L + W    + + +L+ Y IIQ L+   L P + +  V+L P  
Sbjct: 260 NLGPTLSAVFPISIVLLDEPW----KAWVVLVIYIIIQQLESYWLTPTIMARQVSLLPAL 315

Query: 312 IIIAVLVFGGLWGFWGVFFAIPLATLVKAVWK 343
            +IA +VF  ++G  G+  A+PLA + K  ++
Sbjct: 316 TLIAQIVFASIFGLAGLILALPLAVVAKVFFE 347