Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 389 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 75.1 bits (183), Expect = 3e-18
 Identities = 78/333 (23%), Positives = 150/333 (45%), Gaps = 23/333 (6%)

Query: 15  DPHAASLVAILLFGFITIYFFG-----HLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTLA 69
           D    +     +  FI +   G      ++ P +++  +A +    +  + RL++PR LA
Sbjct: 5   DNQGVAFKGFAIMAFIVVILAGIKAASPIVVPFVLSAFIAVICNPAINGMTRLKLPRALA 64

Query: 70  VIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYP-ELAHLE 128
           V I++ VF  LM L +  LV       G+ IN+          +   L E++   L  L+
Sbjct: 65  VAIMM-VFIVLMGLWLASLV-------GSSINEFSRQL---PLYRDQLVEQFSWVLTKLQ 113

Query: 129 IVESVIGNAKNKVLGMGESVVKGSLAS--LVSLATLGVYLILVPLLVFFLLKDKQEMLRM 186
            +   +  +K ++L   +  +  S+ +  L S+  +   L L+ L V F+L + Q++ + 
Sbjct: 114 ALNIEV--SKEQILAYFDPGIALSMTTNMLSSVGGVMANLFLIILTVVFMLFEAQDLPKK 171

Query: 187 ASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAV 246
               L  +  +  K  ++  Q ++ Y+  K L  V  G V     A++ + Y++L AV  
Sbjct: 172 LHFALD-DPDMRIKQIDKFLQSVNQYMVIKTLVSVGTGVVVGTGLALMGVDYALLWAVVA 230

Query: 247 GLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVN 306
            L   IP IG+    +P  ++A  Q G      T L+ Y     + GN++ P      + 
Sbjct: 231 FLFNYIPNIGSIIAAIPPVLLAFIQLGPAGAGGTALL-YLATNTVMGNIVEPKYMGRGLG 289

Query: 307 LHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVK 339
           L  + + ++++ +G L G  G+  ++PL  +VK
Sbjct: 290 LSTLVVFLSLIFWGWLLGSVGMLLSVPLTMIVK 322