Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 366 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  389 bits (998), Expect = e-113
 Identities = 198/355 (55%), Positives = 256/355 (72%), Gaps = 9/355 (2%)

Query: 1   MFEMVSRWYKRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLR 60
           MF +++ WYK RFSDP A +L+ ILL   + IYF G L+APLLVA+VLA+LLEWPV Q+ 
Sbjct: 1   MFSIITNWYKERFSDPQAVTLMLILLGIALIIYFAGGLLAPLLVALVLAFLLEWPVAQMV 60

Query: 61  RLRIPRTLAVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPER 120
           ++ I RT    +V+ +F G+M+L  FGLVP+IW+Q   L+ D+P M +     +    E+
Sbjct: 61  KIGINRTTGASLVLVLFVGVMLLITFGLVPSIWRQGVALVTDLPTMLDKGFITLKGFVEQ 120

Query: 121 YPELAHLEIVESVIGNAKN-----KVLGMGESVVKGSLASLVSLATLGVYLILVPLLVFF 175
           YP+   +E +++ +G  K       +L +G+ ++  S     SL  L VY ILVPLLVFF
Sbjct: 121 YPQFLSVEQLDASVGELKKLLDTQHILDLGKQLIGYS----ASLLVLMVYAILVPLLVFF 176

Query: 176 LLKDKQEMLRMASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILD 235
            LKDK E++R +   +P NR LA KVW EMNQQI NYIRGKV+EIVI+G  SYI FAI+D
Sbjct: 177 FLKDKDELVRGSKRFIPANRDLARKVWLEMNQQIFNYIRGKVIEIVIIGAASYIFFAIMD 236

Query: 236 LRYSVLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNV 295
           LRY+ LL V  G SVLIPY+GA  VT+P+A+VA FQWG++P+F  L++ YGIIQALDGN+
Sbjct: 237 LRYAALLGVLTGFSVLIPYVGATLVTLPIALVAFFQWGISPEFGYLMLGYGIIQALDGNL 296

Query: 296 LVPVLFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDE 350
           LVP+LFS+AV+LHPV II AVLVFGGLWG WGVFFAIPLA+LVKAV  A P  D+
Sbjct: 297 LVPILFSDAVDLHPVFIIAAVLVFGGLWGVWGVFFAIPLASLVKAVVNAWPKADK 351