Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 368 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 71/333 (21%), Positives = 147/333 (44%), Gaps = 21/333 (6%)

Query: 14  SDPHAASLVAILLFGFITIYFFG-----HLIAPLLVAIVLAYLLEWPVTQLRRLRIPRTL 68
           S+   A+     +  F+ I   G      ++ P +++  +A +    +  + + R+P+ L
Sbjct: 4   SNTPTAAYKGFAVMAFVVIILAGIKAASPIVVPFVLSCFIAVICNPAIGLMTKYRVPKWL 63

Query: 69  AVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPERYPELAHLE 128
           AVI+++  F  LM L +  LV       G+ IN+         ++   L E++  + H +
Sbjct: 64  AVILLMC-FIVLMGLWLASLV-------GSSINEFSKQL---PQYRNQLVEQFSWVLH-K 111

Query: 129 IVESVIGNAKNKVLGMGESVVKGSLAS--LVSLATLGVYLILVPLLVFFLLKDKQEMLRM 186
           +    I  +K +VL   +  +  S+ +  L  +  +   L L+ L + F+L +   + + 
Sbjct: 112 LQALNIQISKEQVLAYFDPGMALSMTTNMLSGVGNVMANLFLIILTIVFMLFEASSLPKK 171

Query: 187 ASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRYSVLLAVAV 246
               L        ++ +   Q ++ Y+  K L  +  G +  +  A + + Y++L AV  
Sbjct: 172 LHLALDDPDMRLQQI-DRFLQSVNQYMVIKTLVSLATGLIVGVGLAFIGVDYALLWAVIA 230

Query: 247 GLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVPVLFSEAVN 306
            L   IP IG+    +P  ++A  Q G      T ++  G    + GNV+ P      + 
Sbjct: 231 FLFNYIPNIGSIIAAIPAVLLAFIQLGPAAAGGTTMLYIGANMVM-GNVVEPKFMGRGLG 289

Query: 307 LHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVK 339
           L  + + ++++ +G L G  G+  ++PL  +VK
Sbjct: 290 LSTLVVFLSLIFWGWLLGSVGMLLSVPLTMVVK 322