Pairwise Alignments

Query, 354 a.a., AI-2E family transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 361 a.a., permease PerM, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  373 bits (958), Expect = e-108
 Identities = 192/356 (53%), Positives = 252/356 (70%), Gaps = 3/356 (0%)

Query: 1   MFEMVSRWYKRRFSDPHAASLVAILLFGFITIYFFGHLIAPLLVAIVLAYLLEWPVTQLR 60
           MF   SRWY+ RFSDP A +L+AIL+   + +YF G L+APLLVA+VLA+LLEWPV Q+ 
Sbjct: 1   MFSFFSRWYQERFSDPQAVTLLAILVGLALVLYFAGGLLAPLLVALVLAFLLEWPVAQML 60

Query: 61  RLRIPRTLAVIIVITVFTGLMILAVFGLVPTIWKQVGNLINDVPNMYNGTQKFITSLPER 120
           +L I RT A  +V+ +F G+++L  FGL+P++W+Q  +L+ D+P+M +   + +  L  +
Sbjct: 61  KLGINRTTAASLVLIIFLGIVVLLTFGLIPSVWRQGVSLMTDLPSMIDKGLQTVQGLATQ 120

Query: 121 YPELAHLEIVESVIGNAKNKVLGMGE--SVVKGSLASLVSLATLGVYLILVPLLVFFLLK 178
           YP+   +E +  ++   K K+L       + K  +    SL  L VY ILVPLLVFF LK
Sbjct: 121 YPQFISVEQLNLMVAELK-KLLDTQHVLDIAKQLIGYSASLLVLMVYAILVPLLVFFFLK 179

Query: 179 DKQEMLRMASGILPRNRKLANKVWEEMNQQISNYIRGKVLEIVIVGTVSYITFAILDLRY 238
           DK +++  +    P NR+LA KVW EM+QQI NYIRGKV+EIVIVG  SYI FA + L Y
Sbjct: 180 DKDQLISGSKRFFPTNRQLARKVWFEMHQQIFNYIRGKVIEIVIVGVASYILFAFMGLSY 239

Query: 239 SVLLAVAVGLSVLIPYIGAAAVTVPVAIVALFQWGLTPQFYTLLIAYGIIQALDGNVLVP 298
           S LL V  GLSVLIPY+GA  VT+P+ +VA FQWG + +F  L++ YGIIQALDGNVLVP
Sbjct: 240 SALLGVLTGLSVLIPYVGATLVTLPIMLVAFFQWGFSSEFGYLMLGYGIIQALDGNVLVP 299

Query: 299 VLFSEAVNLHPVAIIIAVLVFGGLWGFWGVFFAIPLATLVKAVWKALPSIDEEPAS 354
           +LFS+AV+LHPV II AVLVFGGLWG  GVFFAIPLA+LVKAV  A P  + EP++
Sbjct: 300 ILFSDAVDLHPVIIIAAVLVFGGLWGVLGVFFAIPLASLVKAVINAWPKTEIEPSA 355