Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) from Pseudomonas fluorescens FW300-N2E2

 Score =  221 bits (564), Expect = 5e-62
 Identities = 132/328 (40%), Positives = 196/328 (59%), Gaps = 2/328 (0%)

Query: 274 IYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKD 333
           ++ V   L ++     L + ++KPLG    A E+VA  +GDLT+ ++T+ + E + L K 
Sbjct: 194 LFVVFAALATVALAMLLTRSIVKPLGEALNAAENVA--RGDLTRPIETHGNDEVSRLLKA 251

Query: 334 FNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVT 393
                + L++ +Q + G  A++    ++      +S  ++ QQ  E+EQ ATA+ EM   
Sbjct: 252 LAAMQQNLRETLQGISGSAAQLATAADELNAVTLDSTQSLQQQNNEIEQAATAVTEMTTA 311

Query: 394 ATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNI 453
             EVA NA   + A  ++ E++  G + VSDT  +I AL++ ++     V+ L   + +I
Sbjct: 312 VEEVARNAVSTSDATRQSSESASLGQQRVSDTVDAIGALASDVQVTGGLVQSLANQSQDI 371

Query: 454 ETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMI 513
             +L VI  IA+QTNLLALNAAIEAARAGESGRGFAVVADEVR LA RTQQST EI  M+
Sbjct: 372 GKVLDVIRAIAEQTNLLALNAAIEAARAGESGRGFAVVADEVRALAYRTQQSTQEIEQMV 431

Query: 514 EQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQS 573
           + ++SGA+    +M  S   A   +  A+ A ++LQ I  ++  I + N+ IASAAEEQ+
Sbjct: 432 QGMRSGATQALDSMQASSSRAASTLAMAERAGDALQTITASVNEIHERNLVIASAAEEQA 491

Query: 574 LVAEEINTNTVKIKDLSTQVADSAKSAS 601
            VA E++ N V I+DLS + A  A   S
Sbjct: 492 QVAREVDRNLVNIRDLSVRSASGADQTS 519



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 35/156 (22%), Positives = 71/156 (45%), Gaps = 29/156 (18%)

Query: 391 AVTATEVANNAQGAA-------AAAHEADEASQDGSKVV----SDTTRSIDALSARIEQA 439
           A+ A     + +G A       A A+   +++Q+  ++V    S  T+++D++ A   +A
Sbjct: 393 AIEAARAGESGRGFAVVADEVRALAYRTQQSTQEIEQMVQGMRSGATQALDSMQASSSRA 452

Query: 440 VEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLA 499
              +   E A   ++TI   +N+I ++ NL+  +AA E A+                 +A
Sbjct: 453 ASTLAMAERAGDALQTITASVNEIHER-NLVIASAAEEQAQ-----------------VA 494

Query: 500 QRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTAD 535
           +   ++   IR++  +  SGA   SA+ +E    A+
Sbjct: 495 REVDRNLVNIRDLSVRSASGADQTSASSHELSQLAN 530



 Score = 27.3 bits (59), Expect = 0.002
 Identities = 34/162 (20%), Positives = 71/162 (43%), Gaps = 22/162 (13%)

Query: 458 KVINDIADQTNLLALNAAIEAARAGESGRGFAVVAD------EVRTLAQRTQQSTTEIRN 511
           K +ND+A+   L +   +IE+ ++ E      +V         + T+A     + + ++ 
Sbjct: 161 KQLNDLAE---LFSKQVSIESQKSQEHYANSRMVVSLFVVFAALATVALAMLLTRSIVKP 217

Query: 512 MIEQLQSGASAVSAAMNESKYT-ADDAVQKAQLANESLQR-IRGAIQRISDMNMQIASAA 569
           + E L +  +     +     T  +D V +   A  ++Q+ +R  +Q IS    Q+A+AA
Sbjct: 218 LGEALNAAENVARGDLTRPIETHGNDEVSRLLKALAAMQQNLRETLQGISGSAAQLATAA 277

Query: 570 EEQSLVA-----------EEINTNTVKIKDLSTQVADSAKSA 600
           +E + V             EI      + +++T V + A++A
Sbjct: 278 DELNAVTLDSTQSLQQQNNEIEQAATAVTEMTTAVEEVARNA 319