Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 629 a.a., Chemotactic transducer from Pseudomonas fluorescens FW300-N2E2

 Score =  332 bits (852), Expect = 2e-95
 Identities = 205/628 (32%), Positives = 349/628 (55%), Gaps = 12/628 (1%)

Query: 1   MRFSQKIVAASSALLLCVIALLSFQQLSTVREEIES--LVQDSLMEMVKGVKNTIESDLA 58
           ++F  KI+  +  +++ V   LSF   +  R++  +   +  +L    + +   ++S LA
Sbjct: 5   LKFGHKILLGACVIVMAVF--LSFSLFNDHRQQASTREALHRNLQATGQLLGANLDSWLA 62

Query: 59  SKKGLAQSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGLGYESDATVVENDDGWEPNA 118
            +  L +   E +  DPT +    ++L    +  +F+A  +G E D+    + +   P+ 
Sbjct: 63  GRILLIEGAAETIAADPTPQTIG-AILSQDIITKTFIASYVGLE-DSRFFIHPERVMPDG 120

Query: 119 DYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQL 178
            YD R+R WY DA R  + V+TEPY+      +I++   P+      VG +   + L QL
Sbjct: 121 -YDVRQRAWYKDAARSLEPVLTEPYIGAGIDYLIMTQAAPIKVDGKAVGVLGASLSLEQL 179

Query: 179 AQLVNSVNLFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPN--VDLKEGTQRIELDGK 236
           A+++N+V+L   GY F+ + DG  + HP+     +  +Q  P     +      ++ +G+
Sbjct: 180 AKIINAVDLNGIGYAFLVSDDGKILVHPDNTRVTKTLAQAFPEGPPSINSALNEVQENGR 239

Query: 237 YYLVKFAQV---PSESWYIGAVVDESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKV 293
             +V F  +   PS  W IG  VD+  A+A++   R S+L+ T+I +L+++  L  LI  
Sbjct: 240 TRIVTFTPINGLPSLHWSIGLSVDKDKAYAVLHAFRASALVATLIAMLVTVGLLGLLINA 299

Query: 294 LMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGA 353
           LM+PL ++  A++ +A G+GDLT+RL + +  EF ++A  FN F E +Q+ I+ +     
Sbjct: 300 LMRPLRSMGSAMQSIADGEGDLTQRLHSLSRDEFGMMAGGFNRFVERIQQSIREVLASSV 359

Query: 354 EIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADE 413
           ++     Q    ++ S  +   Q      +ATA++E+   A E+A +A  A++ A +  +
Sbjct: 360 QLTQLAAQVSQASNASLKSSDTQAALTHNVATAINELGAAAQEIARSAAHASSRASDTRD 419

Query: 414 ASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETILKVINDIADQTNLLALN 473
            +Q+G  VV  +  ++  LS+++    ++++ L   T  I  IL VI  I+DQTNLLALN
Sbjct: 420 QTQEGQSVVQRSISAMSQLSSQVVNTRQDIESLNEKTLKIGRILDVIKGISDQTNLLALN 479

Query: 474 AAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYT 533
           AAIEAARAG++GRGFAVV+DEVRTLA RTQQS  EI +MIE+LQ+GA +  +AM ES+  
Sbjct: 480 AAIEAARAGDAGRGFAVVSDEVRTLAHRTQQSAQEIHSMIEELQAGAGSAVSAMLESQRH 539

Query: 534 ADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQV 593
           +DD V  A+LA E L R+   I  I ++N+ +A+A EEQ+ V + ++ +   I DL+ ++
Sbjct: 540 SDDNVTTARLAGERLNRVLMGIGEIDEINLSVATATEEQTSVVDNLDRDISHINDLNQEM 599

Query: 594 ADSAKSASMAMEVQTENVREQGKLLNTF 621
             + +S   A        R   +++NTF
Sbjct: 600 VGNLQSTLQACTELENQSRRLQQMVNTF 627