Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., Methyl-accepting chemotaxis protein from Pseudomonas fluorescens FW300-N2E2

 Score =  266 bits (679), Expect = 3e-75
 Identities = 187/582 (32%), Positives = 304/582 (52%), Gaps = 28/582 (4%)

Query: 30  VREEIESLVQDSLMEMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFAKSVLESPN 89
           + + +E   +D  +   KG+K+   +D A+++   +   ++L +    + FAKS     +
Sbjct: 60  ISQNVEFFAKDPRVIAAKGLKSYAGAD-AAQQPFPEINQQLLDIF---ERFAKS-----H 110

Query: 90  LKGSFLAIGLGYESDATVVENDDGWEPNADYDPRKRPWYVDAKRERKLVV-TEPYV---- 144
              ++L++G+  E        DD     A+YDPR RPWY  A       V T+ Y     
Sbjct: 111 PTTAYLSVGM--EDGGYASWPDD--PKMANYDPRVRPWYKAAMAAPGTNVRTDAYYWAPD 166

Query: 145 DISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDGVTIA 204
           D+S   +I ++ T        +G +  DV L QL +LV ++ L ++GYL +   +G  + 
Sbjct: 167 DVS---LIGTVHTVADASGKPIGVVGLDVSLKQLTELVKNIKLGESGYLMLVEANGNVLV 223

Query: 205 HP-NAENNGEKFSQFLPN----VDLKEGTQRIELDGKYYLVKFAQVPSESW-YIGAVVDE 258
            P +A++N +  +   PN        +G  +IE+DG  Y+          W +IG +  +
Sbjct: 224 DPADAKHNFKPLADLGPNYAELAKSSDGVTQIEIDGVPYMANVVSSKGLGWRFIGLIKRD 283

Query: 259 SIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKR 318
            +           + I  V+ V+ +++G SF   V+++P+  ++  ++++A G+GDLT++
Sbjct: 284 EVMAEASSLTWLIAAIAAVLAVVFALVGASFA-SVIVRPIRGVANGLQEIAEGEGDLTRK 342

Query: 319 LDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQ 378
           L      E A LA  FN F   + + +Q +    +++      T   A     A  +Q Q
Sbjct: 343 LTVQGKDETATLAGWFNQFLGMIAQLMQRIGSASSDLQTAAADTSHVAQNMNDAAGRQRQ 402

Query: 379 ELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQ 438
            +E ++TA +EM  TA EVA +   AA++A E      DG   + + T S+  LS  +++
Sbjct: 403 AVELVSTAFNEMVATANEVARSCSQAASSADEGYRDVHDGQHHIGEATGSVMKLSDDLQK 462

Query: 439 AVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTL 498
           + + ++ LE  + NI TIL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR L
Sbjct: 463 STQTMQALEQDSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRAL 522

Query: 499 AQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRI 558
           A+RT  ST EI +++  L      V+  M  S   +  +V++ Q A +S  +IR ++  I
Sbjct: 523 ARRTADSTGEIDSLLGNLARRTQEVTQQMQSSLQVSQTSVERIQQARDSFDKIRNSVDSI 582

Query: 559 SDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSA 600
            D N QIA+AAEEQ  VAE+IN +  +I   +  V + A SA
Sbjct: 583 RDQNTQIATAAEEQHQVAEDINRHIAQIHADAQLVEEFAHSA 624



 Score = 33.1 bits (74), Expect = 4e-05
 Identities = 24/126 (19%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 491 VADEVRTLAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQR 550
           VA  +   A R +Q+   +     ++ + A+ V+ + +++  +AD+  +        +  
Sbjct: 389 VAQNMNDAAGRQRQAVELVSTAFNEMVATANEVARSCSQAASSADEGYRDVHDGQHHIGE 448

Query: 551 IRGAIQRISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTEN 610
             G++ ++SD ++Q  S    Q+L  +  N NT  I D    +A+     ++   ++   
Sbjct: 449 ATGSVMKLSD-DLQ-KSTQTMQALEQDSKNINT--ILDTIRSIAEQTNLLALNAAIEAAR 504

Query: 611 VREQGK 616
             +QG+
Sbjct: 505 AGDQGR 510