Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 647 a.a., chemotaxis protein from Pseudomonas fluorescens FW300-N2C3

 Score =  273 bits (697), Expect = 2e-77
 Identities = 193/583 (33%), Positives = 306/583 (52%), Gaps = 30/583 (5%)

Query: 30  VREEIESLVQDSLMEMVKGVKNTIESDLASKKGLAQSTTEILQLDPTNKAFAKSVLESPN 89
           + + +E + +D  +   KG+KN   +D A++  L +   ++L++      FAKS     +
Sbjct: 60  ISQNVEYIAKDPRIIAAKGLKNYSLAD-AAQTPLPEINQQLLEIFDR---FAKS-----H 110

Query: 90  LKGSFLAIGLGYESDATVVENDDGWEPN-ADYDPRKRPWYVDAKRERKLVV-TEPYV--- 144
              ++L++GL   SD       D  +P   +YDPR RPWY  A       V T+ Y    
Sbjct: 111 PTTAYLSVGL---SDGGYASWPD--DPKMTNYDPRVRPWYKAAIAAPGTTVRTDAYYWAP 165

Query: 145 -DISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQLVNSVNLFDAGYLFITTKDG-VT 202
            D+S   +I ++ T      N VG +  DV L QL +LV ++ L D+GYL +   +G V 
Sbjct: 166 DDVS---LIGTVHTVADASGNVVGVVGLDVSLKQLTELVKNIKLGDSGYLMLVEANGNVL 222

Query: 203 IAHPNAENNGEKFSQFLPN----VDLKEGTQRIELDGKYYLVKFAQVPSESW-YIGAVVD 257
           +   +A++N +  +   PN        +G  +IE+DG  Y+          W +IG +  
Sbjct: 223 VDAADAKHNFKPLADLGPNYAELAKSSDGVTQIEIDGVPYMANVVSSKGLGWRFIGLIKR 282

Query: 258 ESIAFAMVDDLRHSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTK 317
           + +           + I   + V+ +++G SF   V+++P+  ++  ++++A G+GDLT+
Sbjct: 283 DEVMAEASSLTWLIAAIAAALAVVFAVVGASFA-SVIVRPIRGVANGLQEIAEGEGDLTR 341

Query: 318 RLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQL 377
           +L      E A LA  FN F   + + +Q +    +++      T   A     A  +Q 
Sbjct: 342 KLSVQGKDETATLAGWFNQFLGMIAQLMQRIGSASSDLQTAAADTSHVAQNMNDAAGRQR 401

Query: 378 QELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIE 437
           Q +E ++TA +EM  TA EVA +   AA++A E      DG   + + T S+  LS  ++
Sbjct: 402 QAVELVSTAFNEMVATANEVARSCSQAASSADEGYRDVHDGQHHIGEATGSVLKLSEDLQ 461

Query: 438 QAVEEVKGLEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRT 497
           Q+ + ++ LE  + NI TIL  I  IA+QTNLLALNAAIEAARAG+ GRGFAVVADEVR 
Sbjct: 462 QSTQTMQALEQDSKNINTILDTIRSIAEQTNLLALNAAIEAARAGDQGRGFAVVADEVRA 521

Query: 498 LAQRTQQSTTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQR 557
           LA+RT  ST EI +++  L      V+  M  S   +  +V++ Q A +S  +IR ++  
Sbjct: 522 LARRTADSTGEIDSLLGNLARRTQEVTQQMQSSLQVSHTSVERIQQARDSFDKIRNSVDS 581

Query: 558 ISDMNMQIASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSA 600
           I D N QIA+AAEEQ  VAE+IN +  +I   +  V + A SA
Sbjct: 582 IRDQNTQIATAAEEQHQVAEDINRHIAQIHADAQLVEEFAHSA 624