Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  230 bits (586), Expect = 2e-64
 Identities = 132/351 (37%), Positives = 212/351 (60%), Gaps = 5/351 (1%)

Query: 267 DLRHSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDME 326
           D R   ++ T++ ++L ++    + + ++ PL      +E +ASG  DL++        E
Sbjct: 286 DARSRLIVSTLLALVLGVLAAWLITRQIILPLRTTMADVERIASG--DLSETAQIQRRDE 343

Query: 327 FAILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATA 386
             +L +       TL++ I  ++   ++I    E+      ++++ +  Q +E +Q+ATA
Sbjct: 344 LGVLQRGIQQMGSTLRELIGGIRDGVSQISAAAEELSAVTQQTSAGVNSQKEETDQVATA 403

Query: 387 MHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGL 446
           MHEM+ T  EVA NA+ AA AA EAD  +++G +VV++    I+ +++ + ++ E +  L
Sbjct: 404 MHEMSATVQEVARNAEQAALAATEADSEAREGDRVVTEVVTQIERMASAVVRSTEAMTAL 463

Query: 447 EVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQST 506
           +  +  I +++ VI  +A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQ+ST
Sbjct: 464 QEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQKST 523

Query: 507 TEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIA 566
            EI  ++  LQ+G   V++ M+ S+   D  V+ A+ A  SL  I   +  I  MN QIA
Sbjct: 524 EEIEGLVAALQNGTQQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIA 583

Query: 567 SAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKL 617
           +AAEEQS VAEEI+ + V ++D+S Q A +++  + +    TE  R  G+L
Sbjct: 584 AAAEEQSAVAEEISRSVVNVRDVSEQTAAASEETAAS---STELARLGGQL 631



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 36/196 (18%)

Query: 354 EIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADE 413
           E++   E+       S  AM    +E +++ + M+ +   A +    A  AA  A  A E
Sbjct: 441 EVVTQIERMASAVVRSTEAMTALQEESDKIGSVMNVIRAVAEQTNLLALNAAIEAARAGE 500

Query: 414 ASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGN----IETILKVINDIADQ--- 466
           A + G  VV+D  R    L+ R +++ EE++GL  A  N    + +I+    D+ D    
Sbjct: 501 AGR-GFAVVADEVRG---LAQRTQKSTEEIEGLVAALQNGTQQVASIMHTSRDLTDSGVE 556

Query: 467 ----------------TNLLALNAAIEAARAGESGRGFAV---------VADEVRTLAQR 501
                           +N+ A+N  I AA   +S     +         V+++    ++ 
Sbjct: 557 LARRAGASLGSITRTVSNIQAMNQQIAAAAEEQSAVAEEISRSVVNVRDVSEQTAAASEE 616

Query: 502 TQQSTTEIRNMIEQLQ 517
           T  S+TE+  +  QLQ
Sbjct: 617 TAASSTELARLGGQLQ 632



 Score = 38.9 bits (89), Expect = 7e-07
 Identities = 31/158 (19%), Positives = 65/158 (41%), Gaps = 10/158 (6%)

Query: 300 ALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHGT 359
           AL+ AIE   +G+              FA++A +     +  QK  + ++G+ A + +GT
Sbjct: 488 ALNAAIEAARAGEAG----------RGFAVVADEVRGLAQRTQKSTEEIEGLVAALQNGT 537

Query: 360 EQTVLGAHESASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGS 419
           +Q     H S       ++   +   ++  +  T + +    Q  AAAA E    +++ S
Sbjct: 538 QQVASIMHTSRDLTDSGVELARRAGASLGSITRTVSNIQAMNQQIAAAAEEQSAVAEEIS 597

Query: 420 KVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIETIL 457
           + V +     +  +A  E+       L    G ++ ++
Sbjct: 598 RSVVNVRDVSEQTAAASEETAASSTELARLGGQLQMMV 635