Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 709 a.a., Methyl-accepting chemotaxis protein from Pseudomonas stutzeri RCH2

 Score =  268 bits (684), Expect = 8e-76
 Identities = 188/529 (35%), Positives = 284/529 (53%), Gaps = 28/529 (5%)

Query: 123 RKRPWYVDAKRERKLVVTEP--YVDISTKKIIISIGTPVYQQSNFVGAMFYDVELTQLAQ 180
           R   +Y+  + + K  V +P  Y      +++ S   P+     F G +  D+ +  + Q
Sbjct: 181 RAGEYYLCPREQLKPCVGDPAPYEMNGQTQLLSSFNAPIIIDGKFHGIVGADIGVDFMQQ 240

Query: 181 LVNSVN---LFDAGYLFITTKDGVTIAHPNAENNGEKFSQFLPNVDLKEGTQRIELDGKY 237
           L++S N      AG + + + +G   A+    N   K +  L + D +   +++     +
Sbjct: 241 LLSSANSQLYGGAGQIALISNNGRLAAYSRDRNLLGKPAAQLLDADEQALVKQLPAGQTH 300

Query: 238 YLVKFAQ------VP------SESWYI------GAVVDE--SIAFAMVDDLRHSSLIYTV 277
           Y +  A+      +P         W +        V+ E   +  A+ ++ R +     V
Sbjct: 301 YRIDHARGRVALFLPFSFPGTDARWVLMLELPTAEVMKELDQLMVALGEESRSNLAAMLV 360

Query: 278 IGVLLSIIGLS---FLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAKDF 334
           IG+L++  GL     + + + +PL  +   +++++ G+GDLT+RL+ ++  E   +A  F
Sbjct: 361 IGMLIAFAGLLAIWLISRRITRPLRDMVVMLDNISQGEGDLTQRLNIDSRNELGQIAAGF 420

Query: 335 NVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAVTA 394
           N F   LQ  I  +     ++   +E T   A  +   +  QL E+E +ATA+HEM  TA
Sbjct: 421 NAFLARLQGMISEVVSSVQKVSDASEHTADIAIRTDKGVQTQLAEIELVATAVHEMTATA 480

Query: 395 TEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGNIE 454
            +VA NA  AA AA+ AD A+  G  +V DT  +I  L++ I +AV+ V+ L   + NI+
Sbjct: 481 QDVARNATQAAEAANNADRAANQGRHIVQDTGATIAELASEIGRAVDVVQTLARDSENID 540

Query: 455 TILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNMIE 514
            IL  I  IA+QTNLLALNAAIEAARAGE GRGFAVVADEVR LAQ+TQQ+T EI+ MI+
Sbjct: 541 AILVTIRSIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRNLAQKTQQATGEIQQMIQ 600

Query: 515 QLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQSL 574
           QLQ G   V   M +S+     +V++A  A E+LQ I  A+  I+DMN QIASAAEEQS 
Sbjct: 601 QLQGGTRDVVQVMEQSQNRTRRSVEQADAAAEALQAITQAVSLINDMNNQIASAAEEQSA 660

Query: 575 VAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQGKLLNTFIV 623
           VAE+IN N   I  ++ QVA  A  AS A    T    +Q +L+N F V
Sbjct: 661 VAEDINRNVTNIGQVAQQVAAGADEASQASAGLTRLAEQQRRLINQFRV 709