Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 640 a.a., Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer from Pseudomonas syringae pv. syringae B728a

 Score =  228 bits (580), Expect = 8e-64
 Identities = 135/339 (39%), Positives = 203/339 (59%), Gaps = 3/339 (0%)

Query: 269 RHSSLIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFA 328
           R + +  T++ ++L II    + + + +PL      ++ +ASG  DLT+ L      E  
Sbjct: 288 RTTQITCTLLAIILGIIAAVIITRQITRPLRETLAVVDRIASG--DLTQTLAVTRSDELG 345

Query: 329 ILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMH 388
           +L +       TL++ I  ++    +I    E+      ++++ +  Q  E +Q+ATAMH
Sbjct: 346 VLQQGIQRMGTTLRELIGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMH 405

Query: 389 EMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEV 448
           EM+ T  EVA NA+ A+ AA  AD  ++DG KVV +    I+ L+  + ++V+ +  LE 
Sbjct: 406 EMSATVAEVARNAEQASQAASNADREARDGDKVVGEAIAQIERLANEVGRSVDAMTELEQ 465

Query: 449 ATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTE 508
            +  I  ++ VI  +A+QTNLLALNAAIEAARAGE+GRGFAVVADEVR LAQRTQQST E
Sbjct: 466 ESDKIGKVMDVIKAVAEQTNLLALNAAIEAARAGEAGRGFAVVADEVRGLAQRTQQSTVE 525

Query: 509 IRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASA 568
           I  ++  LQSG   VS+ M  S+     +V  ++ A  SL  I   +  I  MN QIA+A
Sbjct: 526 IETLVAALQSGTRQVSSIMLNSRELTVSSVTLSRQAGTSLGSITQTVSSIQAMNQQIAAA 585

Query: 569 AEEQSLVAEEINTNTVKIKDLSTQVAD-SAKSASMAMEV 606
           AEEQS VAEEI+ + V ++D+S Q A  S ++A+ ++E+
Sbjct: 586 AEEQSAVAEEISRSIVNVRDVSEQTASASEETAASSVEL 624



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 26/130 (20%)

Query: 502 TQQSTTEIRN---MIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQR----IRGA 554
           T+Q T  +R    +++++ SG    + A+  S         +  +  + +QR    +R  
Sbjct: 310 TRQITRPLRETLAVVDRIASGDLTQTLAVTRS--------DELGVLQQGIQRMGTTLREL 361

Query: 555 IQRISDMNMQIASAAEEQSLVAEE----INTNTVK-------IKDLSTQVADSAKSASMA 603
           I  I D  +QIASAAEE S V E+    +N+  V+       + ++S  VA+ A++A  A
Sbjct: 362 IGGIRDSVVQIASAAEELSAVTEQTSAGVNSQKVETDQVATAMHEMSATVAEVARNAEQA 421

Query: 604 MEVQTENVRE 613
            +  +   RE
Sbjct: 422 SQAASNADRE 431