Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 706 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  213 bits (543), Expect = 2e-59
 Identities = 177/589 (30%), Positives = 281/589 (47%), Gaps = 42/589 (7%)

Query: 65  QSTTEILQLDPTNKAFAKSVLESPNLKGSFLAIGL----GYESD---ATVVENDDGWEPN 117
           Q ++   Q +P       S   +P L  S   +G      Y +D    T  + DD  E  
Sbjct: 112 QISSMYAQFEPNGFDGRDSEFTAPGLMHSVEGVGTLEVYFYRNDDGSQTQSQVDDANEKY 171

Query: 118 AD----YDPRKRPWYVDAKRERKLVVTEPY---VDISTKKIIISIGTPVYQQSNFVGAMF 170
           AD    +  R+  WY+ AK  +K  + EPY   +      ++ S+  P+ +   F G + 
Sbjct: 172 ADTLNEFGLREAEWYLCAKDTQKPCLMEPYLYEITPGNNMLMTSLTVPIVRGGRFRGVVG 231

Query: 171 YDVELTQLAQLVN--SVNLFD--AGYLFITTKDGVTIAH---PNAENNGEKFSQFLPN-- 221
            D+ L    +++   S +L+   A    ++TK  +  A      A   GE   + L N  
Sbjct: 232 VDLNLPVFQKMIEELSASLYQGQAKVTLLSTKGLIVAASHYDKKARPLGEAIDKSLANQI 291

Query: 222 VDLKEGTQRIELDGKYYLVKFAQVP--SESWYIGAVVDESIAFAMVDDLRHSS------- 272
           + L +G   +  D    +     +P     W +   V   IA A  + +  S        
Sbjct: 292 LGLGKGDGYLLNDSSMIVAYPINIPLSGSQWLLAIEVPRQIALASAEQVEGSMQAMAASL 351

Query: 273 ---LIYTVIGVL-LSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFA 328
              ++   IG+  +++I ++  I+ ++ P+  + + +  +AS +GDLT+ L  +   E  
Sbjct: 352 GRFVLLLGIGIAAVAVILIALFIRSVVAPIQQIQQRVSQLASAEGDLTQSLKVDEHAELI 411

Query: 329 ILAKDFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMH 388
            L   FN F   L   I  LK +  E  + ++ T   A E+  ++ +Q  E+E + TA++
Sbjct: 412 ALGNGFNAFIGKLHGLISELKKVATESRNESQATARIAEETKQSVNRQYSEIESVVTAVN 471

Query: 389 EMAVTATEVANNAQGAA---AAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKG 445
           EM+ TA EVA  ++  A   AA     + SQD    ++     +  +S    QA   V  
Sbjct: 472 EMSHTAHEVAKASEQTASESAAMASQVKVSQDS---LTQAVSLVSTMSKESLQAKIAVGK 528

Query: 446 LEVATGNIETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQS 505
           +  ++ NI  IL+VI+ IA QTNLLALNAAIEAARAGE GRGFAVVADEVR+LA +TQ S
Sbjct: 529 VAESSTNISKILEVISAIAAQTNLLALNAAIEAARAGEQGRGFAVVADEVRSLASKTQAS 588

Query: 506 TTEIRNMIEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQI 565
           T +I  +I+ L+      S  +++    A+ AV + + A E+L  +   I  IS+   QI
Sbjct: 589 TDDISRLIDALEQEVKGASGIIDKGVGLAEQAVAQTEQAFEALSVMVAGINEISNQVTQI 648

Query: 566 ASAAEEQSLVAEEINTNTVKIKDLSTQVADSAKSASMAMEVQTENVREQ 614
           A+AAEEQS V EE++ N   I D + ++ D A  A  + E   + V  Q
Sbjct: 649 ATAAEEQSAVTEEVSRNITGISDSAAELMDLAGKARESSESLAKLVGRQ 697