Pairwise Alignments

Query, 623 a.a., methyl-accepting chemotaxis protein from Vibrio cholerae E7946 ATCC 55056

Subject, 665 a.a., putative methyl-accepting chemotaxis sensory transducer (RefSeq) from Shewanella amazonensis SB2B

 Score =  233 bits (594), Expect = 2e-65
 Identities = 158/514 (30%), Positives = 266/514 (51%), Gaps = 25/514 (4%)

Query: 114 WEPNADYDPRKRPWYVDAKRERKLVVTEPYVDISTKKIIISIGTPVY-QQSNFVGAMFYD 172
           ++ + +Y   KRPW+ +A  +  L V +P VD +   I  ++ TPVY      +G    D
Sbjct: 135 YDGDPNYYTNKRPWWQEALDKGGLFVGDPAVDANDGSISATVKTPVYGANGQLLGIGGMD 194

Query: 173 VELTQLAQ-LVNSVNLFDAGYLFITTKDGVTIAHPN-------------AENNGEKFSQF 218
           + +  + + L+  +    +G  F+ T DG  +  P               +NNG +    
Sbjct: 195 ILIDTIGKSLLAPIKYQGSGQAFLMTGDGKLVYFPGFNESFPPGSAIQKVDNNGSEGFTA 254

Query: 219 LPNVDLKE--GTQRIELDGKYYLVKFAQV----PSESWYIGAVVDESIAFAMVDDLRHSS 272
           L  +  ++  G   +   G    V F +V    P + W++  ++   +  A V D   ++
Sbjct: 255 LGQLMQRQSSGFTDVVYQGSPQRVAFVEVAGDYPKQKWHLAFMLPHEVIEAPVRDAFWNA 314

Query: 273 LIYTVIGVLLSIIGLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRLDTNTDMEFAILAK 332
            + ++  +LL  + +  L+  L + L +L  A++++ASG+GDL++R+D   + E  ++A 
Sbjct: 315 CLMSLGIILLVGVTVWLLLLPLRRQLESLLGAMDNMASGEGDLSRRIDIQREDELGLMAD 374

Query: 333 DFNVFCETLQKRIQHLKGIGAEIMHGTEQTVLGAHESASAMAQQLQELEQLATAMHEMAV 392
            FN F   +Q+ ++  + +  ++  G  +       +  A+++Q  +++ +A A  EMA 
Sbjct: 375 AFNRFAAKVQQMLRQTRDLTRDVDDGIVEARKICDVAVGAVSRQKAQIDSVAAAAIEMAH 434

Query: 393 TATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRSIDALSARIEQAVEEVKGLEVATGN 452
           T+ E+A +AQ  A  A  A   + DG ++V++ T  I+ LS+R+ +A   +K L  ++  
Sbjct: 435 TSQEMAASAQRTADFAETAQTQADDGKQIVAEATSGIETLSSRVIEAAAVIKELRGSSEK 494

Query: 453 IETILKVINDIADQTNLLALNAAIEAARAGESGRGFAVVADEVRTLAQRTQQSTTEIRNM 512
           I  +L VI +IA+QTNLLALNAAIEAARAGE GRGFAVVADEVRTLA RTQ ST  I+ +
Sbjct: 495 IGEVLSVIRNIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRTLASRTQDSTANIQGI 554

Query: 513 IEQLQSGASAVSAAMNESKYTADDAVQKAQLANESLQRIRGAIQRISDMNMQIASAAEEQ 572
           I++LQ  A    + M      A           +SL +I  AI  I     +I  A  +Q
Sbjct: 555 IQRLQQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGKITDAIGAILQQTTEITVAIGQQ 614

Query: 573 SLVAEEINTNTVKIKDLSTQVADSAKSASMAMEV 606
           ++VA+E+  N   ++ LS    D + SAS  + V
Sbjct: 615 AVVADEVAQNVENVRGLS----DDSHSASQELAV 644



 Score = 34.7 bits (78), Expect = 1e-05
 Identities = 44/190 (23%), Positives = 78/190 (41%), Gaps = 20/190 (10%)

Query: 261 AFAMVDDLRHSSLIYTVIGVLLSII-GLSFLIKVLMKPLGALSRAIEDVASGQGDLTKRL 319
           A A++ +LR SS     IG +LS+I  ++    +L     AL+ AIE   +G+      +
Sbjct: 481 AAAVIKELRGSS---EKIGEVLSVIRNIAEQTNLL-----ALNAAIEAARAGEQGRGFAV 532

Query: 320 DTNTDMEFAILAKDFNVFCETLQKRIQHLKGIGAEIMHG-----------TEQTVLGAHE 368
             +     A   +D     + + +R+Q        +M             T Q      +
Sbjct: 533 VADEVRTLASRTQDSTANIQGIIQRLQQSAMEAESVMEAGVNDAKRGQLLTSQVQDSLGK 592

Query: 369 SASAMAQQLQELEQLATAMHEMAVTATEVANNAQGAAAAAHEADEASQDGSKVVSDTTRS 428
              A+   LQ+  ++  A+ + AV A EVA N +     + ++  ASQ+ +  +    + 
Sbjct: 593 ITDAIGAILQQTTEITVAIGQQAVVADEVAQNVENVRGLSDDSHSASQELAVSLKAFEQL 652

Query: 429 IDALSARIEQ 438
             ALS  I Q
Sbjct: 653 THALSGNISQ 662